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A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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162 of 7,765 resources matching “protein”
Showing 101–150
simmani91/GeneLinguaLM-v5
by simmani91natural language descriptions of protein functions from amino acid sequences.
valencelabs/mars-fm
by valencelabsThis repository contains the PyTorch model weights for MarS-FM
westlake-repl/Evolla-10B
by westlake-replprotein-language generative model — because proteins deserve better small talk
IQuestLab/IQuest-UBio-MolFM-V1
by IQuestLabUBio-MolFM is a foundation model suite for molecular modeling
alegendaryfish/CodonTranslator
by alegendaryfishprotein-conditioned codon sequence generation model trained on the representative
westlake-repl/Evolla-10B-hf
by westlake-replprotein-language generative model — because proteins deserve better small talk
🧬 BioReason-ProAdvancing Protein Function Prediction withMultimodal Biological Reasoning
wanglab/bioreason-pro-sft
by wanglab🧬 BioReason-ProAdvancing Protein Function Prediction withMultimodal Biological Reasoning
GENTEL-Lab/EVA
by GENTEL-LabEVA is a generative foundation model for universal RNA modeling
jheuschkel/SynCodonLM-V2
by jheuschkel- This repository contains code to utilize the model, and reproduce
protein language model distilled from ProtGPT2 using complementary-regularizer distillation
littleworth/protgpt2-distilled-small
by littleworthprotein language model distilled from ProtGPT2 using complementary-regularizer distillation
littleworth/protgpt2-distilled-tiny
by littleworthprotein language model distilled from ProtGPT2 using complementary-regularizer distillation
# ibm/biomed.sm.mv-te-84m-MoleculeNet-ligand_scaffold-BACE-101 biomed.sm.mv-te-84m is a multimodal biomedical foundation model
ibm-research/biomed.sm.mv-te-84m
by ibm-research# ibm-research/biomed.sm.mv-te-84m biomed.sm.mv-te-84m is a multimodal biomedical
State-of-the-Art Geometric GNN for Predicting Molecular Properties
scikit-bio/TMVec-2
by scikit-bioTM-Vec 2: Transformer-based architecture for remote homology detection
mace-foundations/mace-mh-1
by mace-foundationsMACE-MH-1 is a foundation machine-learning interatomic potential
OpenPeerAI/DockingAtHOME
by OpenPeerAIDistributed and Parallel Molecular Docking Platform
protein embeddings for 236,252 human proteins using ESMC models
This model is a lightweight model pre-trained on SELFIES
nvidia/AMPLIFY_350M
by nvidia> [!NOTE] > This model has been optimized using NVIDIA
nvidia/AMPLIFY_120M
by nvidia> [!NOTE] > This model has been optimized using NVIDIA
ameya98/JAMUN
by ameya98protein structures, presented in the paper JAMUN: Bridging Smoothed Molecular
microsoft/NatureLM-8x7B
by microsoft# Model details ## Model description Nature Language Model (NatureLM) is a
microsoft/NatureLM-8x7B-Inst
by microsoft# Model details ## Model description Nature Language Model (NatureLM) is a
protein function prediction from amino acid sequences using the Gene
protein function prediction from amino acid sequences using the Gene
protein function prediction from amino acid sequences using the Gene
protein function prediction from amino acid sequences using the Gene
protein function prediction from amino acid sequences using the Gene
protein function prediction from amino acid sequences using the Gene
protein. This is an example for finetuning ibm/biomed.omics.bl.sm-ted-458m for protein
View label scheme (20 labels for 1 components)
PurvaTijare/PPTStab
by PurvaTijarePrediction and Designing of thermostable proteins with a desired melting temperature
nasa-impact/nasa-ibm-st.38m
by nasa-impactINDUS-Retriever-small (previously nasa-smd-ibm-st.38m) is
Accurate prediction of drug-target binding affinity is essential in
Drugs must satisfy stringent criteria for both efficacy and safety
Drugs must satisfy stringent criteria for both efficacy and safety
Drugs targeting the central nervous system must meet stringent criteria
Accurate prediction of drug-target binding affinity is essential in
ibm-research/biomed.omics.bl.sm.ma-ted-458m
by ibm-researchproteins, small molecules, and single-cell gene data. Designed for robust
mims-harvard/ProCyon-Full
by mims-harvardprotein phenotypes, which combines a large language model with protein
# ibm/biomed.sm.mv-te-84m-MoleculeNet-ligand_scaffold-HIV-101 biomed.sm.mv-te-84m is a multimodal biomedical foundation model
# ibm/biomed.sm.mv-te-84m-MoleculeNet-ligand_scaffold-FREESOLV-101 biomed.sm.mv-te-84m is a multimodal biomedical foundation model
# ibm/biomed.sm.mv-te-84m-MoleculeNet-ligand_scaffold-QM7-101 biomed.sm.mv-te-84m is a multimodal biomedical foundation model
# ibm/biomed.sm.mv-te-84m-MoleculeNet-ligand_scaffold-BBBP-101 biomed.sm.mv-te-84m is a multimodal biomedical foundation model
# ibm/biomed.sm.mv-te-84m-MoleculeNet-ligand_scaffold-ESOL-101 biomed.sm.mv-te-84m is a multimodal biomedical foundation model
# ibm/biomed.sm.mv-te-84m-MoleculeNet-ligand_scaffold-CLINTOX-101 biomed.sm.mv-te-84m is a multimodal biomedical foundation model