Find open-source science resources
A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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7,100 resources indexed
Showing 7,001–7,050
Identifiers correspond to curated multi-omics datasets documenting post-transcriptional regulatory changes from RNA-binding protein perturbations in the KnockRBP database.
LINCS vocabularies support the linking of data related to cultural identities and activities, broadly defined, to complement other linked data vocabularies. They aim to support diversity, inclusivity, and context in the representation of human culture online.
A sub-registry of the Library of Congress Linked Data Service
A sub-registry of the Library of Congress Linked Data Service
The Thesaurus for Graphic Materials is a tool for indexing visual materials by subject and by genre/format. The thesaurus includes more than 7,000 subject terms and 650 genre/format terms to index types of photographs, prints, design drawings, ephemera, and other pictures. In 2007, the subject and genre/format vocabularies, previously maintained separately, were merged into a single list and migrated to new software, MultiTes. New terms are added regularly. TGM is searchable through the Prints and Photographs Online Catalog (PPOC). For questions about the thesaurus, contact TGM editors at: tgmed@loc.gov. (from homepage)
A sub-registry of the Library of Congress Linked Data Service
A sub-registry of the Library of Congress Linked Data Service
The Library of Congress Linked Data Service (id.loc.gov) provides interactive and machine access to the Library's authority and bibliographic metadata, along with commonly-found standards and vocabularies used and/or maintained by the Library of Congress. Each controlled vocabulary list has a resolvable URI, as does each data value within it. Ontologies for several major data element sets are also available. This includes the LCSH (Library of Congress Subject Headings), the TGM (Thesaurus for Graphic Materials), preservation vocabularies, language and country codes, or the American Folklore Society Ethnographic Thesaurus (AFS Ethnographic Thesaurus) among others.
Loterre (Linked open terminology resources) is a platform for multidisciplinary terminological scientific resources sharing, complying with the linked open data standards and the FAIR principles.
A vocabulary in LOV gathers definitions of a set of classes and properties (together simply called terms of the vocabulary), useful to describe specific types of things, or things in a given domain or industry, or things at large but for a specific usage. Terms of vocabularies also provide the links in linked data, in the above case between a Person and a City. The definitions of terms provided by the vocabularies bring clear semantics to descriptions and links, thanks to the formal language they use (some dialect of RDF such as RDFS or OWL). In short, vocabularies provide the semantic glue enabling Data to become meaningful Data. [from https://lov.linkeddata.es/dataset/lov/about]
Identifiers correspond to literature references for molecular glue studies in the MGTbind database.
Identifiers correspond to ternary complex interactions involving molecular glues with bioactivity measurements in the MGTbind database.
Identifiers correspond to curated molecular glue compounds with chemical structures and physicochemical properties in the MGTbind database.
MoonProt provides identifiers for manually curated moonlighting proteins, which are proteins that perform two or more distinct, unrelated physiological functions using a single polypeptide chain.
A registry of metadata crosswalks
Nbvok is the vocabulary service provided by the National Library of Norway, containing controlled vocabularies represented as open linked data according to the SKOS-ontology. Our vocabularies are published using the Skosmos application. SKOSMOS is developed by the National Library of Finland and designed particularly with user-friendly navigation in structured vocabularies in mind. [from about page]
The Ontology Lookup Service (OLS) is a repository for biomedical ontologies that aims to provide a single point of access to the latest ontology versions.
A mid-level ontology describing devices, services, and networking that extends SAREF
Ontobee is aimed to facilitate ontology data sharing, visualization, query, integration, and analysis.
A vocabulary of licenses produced by the Open Source Initiative (OSI)
The legacy namespace for representing OWL in XML
TyPon provides a comprehensive description of the existing microbial typing methods for the identification of bacterial Isolates and their classification. Such a description constitutes an universal format for the exchange of information on the microbial typing field, providing a vehicle for the integration of the numerous disparate online databases. In its current version, TyPon describes most used microbial typing methods but it is, and always will be, a work in progress given the constant advances in the microbial typing field.
Identifiers correspond to pangenome IDs for linking orthologous genes across Streptococcus pneumoniae strains for comparative genomics analysis
A schema representing publication metadata
Identifiers correspond to systematic review protocols for the purpose of promoting transparency and reducing duplication in health research in the PROSPERO registry, an international prospective register of systematic reviews.
Raras is an open, FAIR-compliant knowledge graph of rare diseases — the largest in Latin America — integrating Orphanet, the Human Phenotype Ontology (HPO), OMIM, MONDO, ClinVar, Open Targets, PubMed and ClinicalTrials.gov with Brazilian public-health (SUS) data. It mints stable RARAS identifiers for diseases, reference centers, protocols, associations, communities and medications, each resolvable as Linked Data (SPARQL, RDF, GraphQL, GA4GH Beacon/Phenopackets) with a dereferenceable vocabulary and VOID/DCAT metadata.