Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

6,963 resources indexed

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A vocabulary service based on SKOSMOS provided by ACDH-CH Austrian Centre for Digital Humanities and Cultural Heritage, e.g., for the DARIAH-EU project.

A vocabulary and ontology repository for agronomy and related domains.

Atom is an XML-based document format that describes lists of related information known as "feeds". Feeds are composed of a number of items, known as "entries", each with an extensible set of attached metadata. For example, each entry has a title. (from homepage)

The BiodivPortal is an OntoPortal instance for biodiversity-related ontologies

This ontology contains terms for defining a context-free grammar. The basic property is mustBeOneSequence which is equivalent to the expression of a production in the original simple BNF. Rules can be used to convert into and out of shorthand forms such as optional, repeating and token-separated list forms. Terminals are described either as a string, which is represented by itself, or are defined by a regular expression using cfg:matches.

The Annotea Bookmark Schema, describing properties used to define instances of bookmarks, topics, and shortcuts.

This ontology is an OWL profile of the IEC Common Information Model for Smart Grids, developed by the Cerise-SG project. This profile extends the cim-smartgrid profile previously created by Maarten Steen (available at http://ns.cerise-project.nl/energy/def/cim-smartgrid) with the classes Register and Channel. This OWL profile was generated from the UML version of the IEC Common Information Model using the CIMTool (from ontology)

The Crop Ontology (CO) current objective is to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms

A SKOSMOS server for the French School for Advanced Studies in the Social Sciences (EHSSS)

The LifeWatch ERIC repository of semantic resources for the ecological domain.

A resource for anatomical and disease terms

n international group of clinicians working in the field of dysmorphology has initiated the standardization of terms used to describe human morphology. The goals are to standardize these terms and reach consensus regarding their definitions. In this way, we will increase the utility of descriptions of the human phenotype and facilitate reliable comparisons of findings among patients. Discussions with other workers in dysmorphology and related fields, such as developmental biology and molecular genetics, will become more precise. [from homepage]

A centralized service for interoperable thesauri, ontologies and classification schemes for different subject areas based on SKOSMOS.

The GESIS Controlled Vocabulary (CV) browser provides thesauri, terminologies and classifications offered by GESIS for browsing and downloading.

The GESIS Knowledge Graph Ontology is used to build the GESIS Knowledge Graph (GESIS KG) which provides a FAIR-compliant semantic representation of scholarly metadata from the social sciences available in the GESIS Search.

The Thesaurus for the Social Sciences (TheSoz) contains about 12,000 entries, of which more than 8,000 are descriptors (authorized keywords) and about 6,000 non-descriptors. Topics from all disciplines of the social sciences are covered. This SKOS version of the thesaurus contains descriptors and non-descriptors in four languages (German, English, French, and Russian) as well as links to the TheSoz Classification, the STW Thesaurus for Economics, the AGROVOC Multilingual Thesaurus, and to DBpedia.

The internationalizatio (i18n) namespace is used for describing combinations of language tag and base direction in RDF literals. It is used as an alternative mechanism for describing the BCP47 language tag and base direction of RDF literals that would otherwise use the xsd:string or rdf:langString datatypes.

A timezone-aware extension of the iCal RDF vocabulary

In many areas of scholarly work, controlled vocabularies (gazetteers, thesauri, etc.) play a crucial role as a stable reference in the creation of resources as well as for ensuring interoperability between disparate projects and their data. The ILC4CLARIN vocabulary platform provides services and tools that allow for the collaborative maintenance and publication of vocabularies and taxonomies of any kind. The ILC4CLARIN vocabulary platform is based on the open-source Skosmos software which uses SKOS as its underlying data model. This software allows for the browsing of vocabularies with structured concept displays and the visualisation of concept hierarchies. Vocabularies can be queried via a search interface or by consulting an alphabetical or thematic index. With the ILC4CLARIN vocabulary platform they can also be accessed via a REST-API. This platform was conceived as a vocabulary hosting service for partners of the national CLARIN-IT consortium, H2IOSC project, and is intended to contribute to the future federation of vocabulary platforms within the SSH Open Cluster. [from about page]

Identifiers correspond to intron-encoded open reading frames (iORFs) for investigating translatable sORFs within introns.

Identifiers correspond to curated multi-omics datasets documenting post-transcriptional regulatory changes from RNA-binding protein perturbations in the KnockRBP database.

Luxembourgish project to make legislative text available

LINCS vocabularies support the linking of data related to cultural identities and activities, broadly defined, to complement other linked data vocabularies. They aim to support diversity, inclusivity, and context in the representation of human culture online.

A sub-registry of the Library of Congress Linked Data Service

A sub-registry of the Library of Congress Linked Data Service

The Thesaurus for Graphic Materials is a tool for indexing visual materials by subject and by genre/format. The thesaurus includes more than 7,000 subject terms and 650 genre/format terms to index types of photographs, prints, design drawings, ephemera, and other pictures. In 2007, the subject and genre/format vocabularies, previously maintained separately, were merged into a single list and migrated to new software, MultiTes. New terms are added regularly. TGM is searchable through the Prints and Photographs Online Catalog (PPOC). For questions about the thesaurus, contact TGM editors at: tgmed@loc.gov. (from homepage)

A sub-registry of the Library of Congress Linked Data Service

A sub-registry of the Library of Congress Linked Data Service