Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

887 of 7,078 resources

Showing 601–650

The Nucleotide Transformers are a collection of foundational language models that were pre-trained on DNA sequences from whole-genomes. Compared to other approaches, our models do not only integrate information from single reference genomes, but leverage DNA sequences from over 3,200 diverse human…

Idle17.9K1 year ago
Python

Evo 2 is a state of the art DNA language model for long context modeling and design. Evo 2 models DNA sequences at single-nucleotide resolution at up to 1 million base pair context length using the StripedHyena 2 architecture, using Savanna.

Idle01 year ago
Idle3821 year ago
Python

# Model Card for Model ID PlantGFM is a genetic foundation model pre-trained on the complete genome sequences of 12 model plants, encompassing 108 billion nucleotides. Using the Hyena framework with 220 million parameters and a context length of 64K bp, PlantGFM models sequences at…

Idle751 year ago
Idle2.7K1 year ago

NovoMolGen is a family of molecular foundation models trained on 1.5 billion ZINC-22 molecules with Llama architectures and FlashAttention. It achieves state-of-the-art performance on both unconstrained and goal-directed molecule generation tasks.

Idle4031 year ago

Palmyra-Med, a powerful LLM designed for healthcare

Idle531 year ago
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中文版说明

Idle1471 year ago
Python

Neeto-1.0-8b is an openly released biomedical large language model (LLM) created by BYOL Academy to assist learners and practitioners with medical exam study, literature understanding, and structured clinical reasoning.

Idle7.7K1 year ago
Python

This repository contains the official model of the paper A Unified Predictive and Generative Solution for Liquid Electrolyte Formulation.

Idle01 year ago

This is a ReactionT5 pre-trained to predict the products of reactions. You can use the demo here.

Idle2K1 year ago
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This is a ReactionT5 pre-trained to predict the reactants of reactions. You can use the demo here.

Idle1.7K1 year ago
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This repos contains the biomedicine MLLM developed from Qwen2.5-VL-3B-Instruct in our paper: On Domain-Adaptive Post-Training for Multimodal Large Language Models. The correspoding training dataset is in biomed-visual-instructions.

Idle1211 year ago
Python

# LAMAR LAMAR is a Foundation Language Model for RNA Regulation, which achieves better or comparable performance compared to baseline models in various RNA regulation tasks, helping to decipher the rules of RNA regulation.

Idle01 year ago

# Position-based Equivariant Graph Neural Network (pos-egnn) This repository contains PyTorch model for loading and performing inference using the pos-egnn, a foundation model for Chemistry and Materials.

Idle561 year ago
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Idle01 year ago

Specialized model for Chemical Entity Recognition - Identifies chemical compounds and substances in biomedical literature

Idle711 year ago
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Specialized model for Chemical Entity Recognition - Identifies chemical compounds and substances in biomedical literature

Idle104.1K1 year ago
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Specialized model for Chemical Entity Recognition - Chemical entities from the BC5CDR dataset

Idle256.9K1 year ago
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A specialized medical embedding model fine-tuned from Clinical ModernBERT using InfoNCE contrastive learning on PubMed title-abstract pairs.

Idle2.8K1 year ago
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This repository provides quantized GGUF versions of the google/medgemma-4b-it model. These 4-bit and 5-bit quantized variants retain the original model’s strengths in multimodal medical reasoning, while reducing memory and compute requirements—ideal for efficient inference on resource-constrained…

Idle1061 year ago

JAMUN is a novel approach for generating conformational ensembles of protein structures, presented in the paper JAMUN: Bridging Smoothed Molecular Dynamics and Score-Based Learning for Conformational Ensembles.

Idle01 year ago

This project supports all types of 2D medical X-ray images, including chest, dental, and others. It performs super-resolution and denoising using a RealESRGAN-based model.

Idle01 year ago
Idle01 year ago

Highly focused on medical Training datasets ; + Upgraded inplace

Idle1201 year ago
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Idle2161 year ago
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This model classifies facial skin images into 6 common dermatological conditions using a fine-tuned EfficientNetV2B0 architecture.

Idle731 year ago
Python

darkknight25/deepseek-16b-medical-GPT is a fine-tuned version of deepseek-ai/deepseek-l6b-moe-chat, optimized for medical question answering, reasoning, and clinical summarization using QLoRA and open-access healthcare datasets.

Idle01 year ago
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Unsloth Dynamic 2.0 achieves superior accuracy & outperforms other leading quants.

Idle17.7K1 year ago
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This is a merge of pre-trained language models created using mergekit, combining the specialty and general reasoning skills of Esper 3 8b and Shining Valiant 3 8b.

Idle151 year ago
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Using llama.cpp release b5868 for quantization.

Idle4.1K1 year ago

For a convenient overview and download list, visit our model page for this model.

Idle4421 year ago
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For a convenient overview and download list, visit our model page for this model.

Idle3.6K1 year ago
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For a convenient overview and download list, visit our model page for this model.

Idle4651 year ago
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For a convenient overview and download list, visit our model page for this model.

Idle4281 year ago
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Segment Anything in 3D Medical Images and Videos

Idle721 year ago

> A CMR-report contrastive model combining Vision Transformers and pretrained text encoders.

Idle141 year ago

Unsloth Dynamic 2.0 achieves superior accuracy & outperforms other leading quants.

Idle6.5K1 year ago
Python
Idle3.5K1 year ago
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This repository contains pre-trained models from RadImageNet, a large-scale radiologic image dataset designed to facilitate transfer learning for medical imaging applications.

Idle01 year ago

!image # Compumacy-Experimental_MF ## A Specialized Language Model for Clinical Psychology & Psychiatry

Idle631 year ago
Python

Welcome to IBM's series of large foundation models for sustainable materials. Our models span a variety of representations and modalities, including SMILES, SELFIES, 3D atom positions, 3D density grids, molecular graphs, and other formats.

Idle931 year ago
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Idle10.4K1 year ago
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Idle1981 year ago
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Idle2141 year ago
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Idle2.7K1 year ago
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