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## Description: Geneformer is a foundational transformer model pretrained on a large-scale corpus of single-cell transcriptomes to enable context-specific predictions in settings with limited data in network biology.

## Description: Geneformer is a foundational transformer model pretrained on a large-scale corpus of single-cell transcriptomes to enable context-specific predictions in settings with limited data in network biology. This model version was continually pretrained on ~14 million cancer transcriptomes…

## Description: Geneformer is a foundational transformer model pretrained on a large-scale corpus of single-cell transcriptomes to enable context-specific predictions in settings with limited data in network biology.

## Description: Geneformer is a foundational transformer model pretrained on a large-scale corpus of single-cell transcriptomes to enable context-specific predictions in settings with limited data in network biology.

## Model Overview PlantBiMoE is a DNA language model trained on 42 representative plant species genomes. More specifically, PlantBiMoE uses the BiMamba and SparseMoE architecture with a masked language modeling objective to leverage highly available genotype data from 42 different plant speices to…

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This is a merge of pre-trained language models created using mergekit.

From paper: "MolParser: End-to-end Visual Recognition of Molecule Structures in the Wild" (ICCV2025 Accept)

MACE-MH-1 is a foundation machine-learning interatomic potential (MLIP) that bridges molecular, surface, and materials chemistry through cross-domain learning:

Hulu-Med: A Transparent Generalist Model towards Holistic Medical Vision-Language Understanding

Large Language and Vision Assistant for bioMedicine (i.e., “LLaVA-Med”) is a large language and vision model trained using a curriculum learning method for adapting LLaVA to the biomedical domain. It is an open-source release intended for research use only to facilitate reproducibility of the…

This model was added by Hugging Face staff.

# MedicalLlama3.2-11B-IT ## Model Description This is a fine-tuned version of meta-llama/Llama-3.2-11B-Vision-Instruct on a multimodal dataset consisting of radiological images and associated medical concepts and captions extracted from the PMC Open Access Subset.

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BulkRNABert is a transformer-based, encoder-only language model pre-trained on bulk RNA-seq profiles from the TCGA dataset using self-supervised masked language modeling, following the original BERT framework. The model is trained to reconstruct randomly masked gene expression values from their…

MedQA Github porject: https://github.com/hussien/MedQA Read the detailed expermintal report here: https://github.com/hussien/MedQA/blob/main/report/MedQA.pdf

ChemFIE-BED is a sentence-transformers based on gbyuvd/chemselfies-base-bertmlm fine-tuned on around (for now) 2 million pairs of valid molecules' SELFIES (Krenn et al. 2020) taken from COCONUTDB (Sorokina et al. 2021) and ChemBL34 (Zdrazil et al. 2023).

GitHub homepage: Cell2Sentence GitHub

基于模板的化学反应产物预测模型，使用图注意力网络(GAT)预测反应中心。

Complete layer-wise protein embeddings for 236,252 human proteins using ESMC models

This model is a fine-tuned version of google/medgemma-4b-it adapted for binary mammogram classification on the OMAMA 256×256 dataset. The dataset consists of ~154k mammogram image slices (.npz) with metadata JSONs providing labels (NonCancer, Cancer).

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Tahoe-x1 is a family of perturbation-trained single-cell foundation models with up to 3 billion parameters, developed by Tahoe Therapeutics. Pretrained on 266 million single-cell transcriptomic profiles including the Tahoe-100M perturbation compendium, Tahoe-x1 achieves state-of-the-art performance…

BioCAP is a foundation model for biology organismal images. It is trained on TreeOfLife-10M with synthetic captions (TreeOfLife-10M-Captions) as supervision on the basis of a CLIP model (ViT-B/16) pre-trained by OpenAI. BioCAP achieves state-of-the-art performance on text-image retrieval tasks.

The Nucleotide Transformers are a collection of foundational language models that were pre-trained on DNA sequences from whole-genomes. Compared to other approaches, our models do not only integrate information from single reference genomes, but leverage DNA sequences from over 3,200 diverse human…

Specialized model for Chemical Entity Recognition - Chemical entities from the BC5CDR dataset

Specialized model for Species Entity Recognition - Species and organism names

GeneJEPA is a Joint-Embedding Predictive Architecture (JEPA) trained for self-supervised representation learning on scRNA-seq. It uses a Perceiver-style encoder to handle sparse, high-dimensional gene count vectors and a Fourier-feature tokenizer for numerical tokenization.

DermLIP is a vision-language model for dermatology, trained on the Derm1M dataset—the largest dermatological image-text corpus to date. This model variant (PanDerm-base-w-PubMed-256) utilizes domain-specific pretraining to deliver superior performance compared to other DermLIP variants..

Hulu-Med: A Transparent Generalist Model towards Holistic Medical Vision-Language Understanding

# Biomni-R0-32B-Preview This repo contains the weights of Biomni-R0-32B-Preview, a research preview of the series of biomedical AI agents trained by the Biomni team.

InstaNovoPlus is a diffusion-based model for de novo peptide sequencing from mass spectrometry data. This model leverages multinomial diffusion for accurate, database-free peptide identification for large-scale proteomics experiments.

Typhoon-Si-Med-Thinking-4B is Southeast Asia’s first state-of-the-art, small, and efficient medical reasoning model, jointly developed by Typhoon (SCB 10X) and the Siriraj Informatics and Data Innovation Center (SiData+) at Siriraj Hospital, Mahidol University.

MedVAL-4B (medical text validator) is a language model fine-tuned to assess AI-generated medical text outputs at near physician-level reliability.

This model is a lightweight model pre-trained on SELFIES (Self-Referencing Embedded Strings) representations of molecules. It is trained on 2.7M unique and valid molecules taken from COCONUTDB and ChemBL34, with 7.3M total generated masked examples.

> [!NOTE] > This model has been optimized using NVIDIA's TransformerEngine > library. Slight numerical differences may be observed between the original model and the optimized > model. For instructions on how to install TransformerEngine, please refer to the > official documentation.

> [!NOTE] > This model has been optimized using NVIDIA's TransformerEngine > library. Slight numerical differences may be observed between the original model and the optimized > model. For instructions on how to install TransformerEngine, please refer to the > official documentation.

Here is the pretrained version of PolyTAO, the first pretrained generative language model for polymer design.

Evo 2 is a state-of-the-art DNA language model trained autoregressively on trillions of DNA tokens.

Website    🤖 7B Model    🤖 32B Model    MedEvalKit    Technical Report    Lingshu MCP

Website    🤖 7B Model    🤖 32B Model    MedEvalKit    Technical Report    Lingshu MCP

The Nucleotide Transformers are a collection of foundational language models that were pre-trained on DNA sequences from whole-genomes. Compared to other approaches, our models do not only integrate information from single reference genomes, but leverage DNA sequences from over 3,200 diverse human…