Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

26 of 6,223 resources

A vocabulary used in tandem with SHACL for representing node shapes

Active1553 weeks ago
HTML
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The Data Privacy Vocabulary provides an ontology (classes and properties) and taxonomies of concepts to represent information regarding how personal data is processed in the form of an ontology or a knowledge graph.

Active771 month ago
HTML
NOASSERTION
Active71 month ago
Makefile
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Ontologies that aim to provide semantic specifications for units of measure, quantity kind, dimensions and data types.

Active1541 month ago
HTML
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An issue on the UBERON GitHub Issue tracker

Active1551 month ago
Emacs Lisp
NOASSERTION
Active182 months ago
NOASSERTION

Ontology, part of the SI Reference Point, covering measurement units (SI base units and SI units with special names) and prefixes.

Active153 months ago
NOASSERTION

The Generative Artificial Intelligence Delegation Taxonomy (GAIDeT) assigns identifiers to contributor roles as an extension to the Contributor Roles Taxonomy (CRediT) to support promoting transparency and accountability in academic publishing when AI contribtors are involved in research. It is operationalized in the [GAIDeT Declaration Generator](https://panbibliotekar.github.io/gaidet-declaration/), an interactive tool for researchers to disclose the delegation of tasks to generative AI (GAI) tools in accordance with the GAIDeT taxonomy.

Active74 months ago
HTML
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Active55 months ago
Python
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Use this database to browse the CMECS classification and to get definitions for individual CMECS Units. This database contains the units that were published in the Coastal and Marine Ecological Classification Standard.

Idle88 months ago
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HOSO is an ontology of informational entities and processes related to healthcare organizations and services.

Idle09 months ago
HTML
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HEPRO is an ontology of informational entities and processes related to health procedures and health activities.

Idle010 months ago
HTML
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Unified Code for Units of Measure (UCUM) is a code system intended to include all units of measures being contemporarily used in international science, engineering, and business.

Idle1011 year ago
HTML
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A project supporting the DRAO application ontology, a hierarchy of specific research domains and descriptors which imports subsets of terms from over 40 publicly-available terminologies. (from repository)

Idle21 year ago
Makefile
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A terminology for the skills necessary to make data FAIR and to keep it FAIR.

Idle171 year ago
Makefile
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The Semantic Web for Earth and Environmental Terminology is a mature foundational ontology that contains over 6000 concepts organized in 200 ontologies represented in OWL. Top level concepts include Representation (math, space, science, time, data), Realm (Ocean, Land Surface, Terrestrial Hydroshere, Atmosphere, etc.), Phenomena (macro-scale ecological and physical), Processes (micro-scale physical, biological, chemical, and mathematical), Human Activities (Decision, Commerce, Jurisdiction, Environmental, Research).

Idle1401 year ago
Turtle
NOASSERTION

The AOPO provides classes and relationships for the semantic representation of the Adverse Outcome Pathway framework.

Stale132 years ago
Rich Text Format
NOASSERTION
Stale703 years ago
Makefile
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Stale04 years ago
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This proposed vocabulary allows edges in Property Graphs (e.g Neo4j, RDF*) to be augmented with edge properties that specify ontological semantics, including (but not limited) to OWL-DL interpretations. [from GitHub]

Stale355 years ago
Makefile
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The Reagent Ontology (ReO) adheres to OBO Foundry principles (obofoundry.org) to model the domain of biomedical research reagents, considered broadly to include materials applied “chemically” in scientific techniques to facilitate generation of data and research materials. ReO is a modular ontology that re-uses existing ontologies to facilitate cross-domain interoperability. It consists of reagents and their properties, linking diverse biological and experimental entities to which they are related. ReO supports community use cases by providing a flexible, extensible, and deeply integrated framework that can be adapted and extended with more specific modeling to meet application needs.

Stale06 years ago
Python
NOASSERTION