Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

90 of 7,767 resources matching “protein”

Showing 51–90

protein markers at the single-cell level, producing high dimensional

Idle21 year ago
R
GPL-3.0

energetics (energy and entropy contributions) around proteins and small molecules.

Idle61 year ago
Jupyter Notebook
GPL-3.0

OUTPOST is a comprehensive pipeline for whole-metagenome shotgun sequencing

Stale82 years ago
HTML
GPL-3.0

protein-protein interactions as priors for gene co-expression, netsmooth

Stale302 years ago
R
GPL-3.0

proteins at either bulk level or cell type level can be integrated

Stale02 years ago
R
GPL-3.0

protein products). The network is scanned using SConES, which looks

Stale42 years ago
R
GPL-3.0

protein prediction data without requiring programming expertise. It processes .pkl, .json

Stale332 years ago
Python
GPL-3.0

protein coding genes. FGGA embodies elements of predicate logic, communication

Stale32 years ago
R
GPL-3.0

An upgraded causal reasoning tool from Melas et al in

Stale632 years ago
R
GPL-3.0

protein sequence data and classify them into families and subfamilies

Stale13 years ago
R
GPL-3.0

magrene allows the identification and analysis of graph motifs in

Stale33 years ago
R
GPL-3.0

protein microarray data. This package contains different data pre-processing

Stale13 years ago
R
GPL-3.0

protein databases based on user-submitted genomic variants, splice-junctions

Stale63 years ago
R
GPL-3.0

proteins. This package integrates chemical modification data generated from a host

Stale55 years ago
R
GPL-3.0

icetea (Integrating Cap Enrichment with Transcript Expression Analysis) provides functions

Stale26 years ago
R
GPL-3.0

protein-coding transcript of a gene with or without its corresponding

Stale157 years ago
Python
GPL-3.0

Peak calling for ChIP-seq data with consideration of potential

Stale108 years ago
R
GPL-3.0

identifies transcriptional regulatory modules (TRMs) from protein-protein interaction networks.

Stale311 years ago
R
GPL-3.0

protein levels that are independent of total mRNA levels (i.e. changes

protein expression analysis, ADT evaluation, ligand-receptor interaction analysis, and interactive

interactions of proteins to guide and validate the integration of links.

proteins (Y), to infer a matrix of molecular protein dependencies

protein domains or metabolomics profiling, are propagated to their neighbours

protein interaction profiles of small molecules from whole cell or tissue

protein-coding genes, distal enhancers, and genes encoding microRNAs and lncRNAs

protein identifiers between state-of-art biological databases: CARD (<https://card.mcmaster.ca

protein to interact with it. The DNA binding protein has to be described

protein and gene information can be searched for using the API. Methods

proteins from multi-omics' data (MOMA) algorithm, as well as ancillary

analysis of thermal proteome profiles reveals novel drug-binding proteins.

protein-protein interactions from co-elution chromatogram profiles. This package

Significance assessment for distance measures of time-course protein profiles

protein-DNA interaction or a specific chromatin modification. When replicate

protein complex assembly and (differential) protein-protein interactions across conditions

protein information using a FASTA formatted amino acid file, and an export

protein similarity, functional protein domain analysis, and domain-domain interaction

protein interactions from 2D thermal profiles (DLPTP), Performs an FDR-controlled

proteins VarCon calcualtes the HEXplorer score as an estimation. Besides

protein-protein interaction databases and integrative resources such as KEGG

proteins or lipids from live-cell time-lapse fluorescent imaging