Find open-source science resources
A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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3 of 7,088 resources
High-performance open-source proteomics database search engine written in Rust, converting raw mass spectra into peptide identifications via fragment-indexed searching with machine-learned PSM rescoring (LDA), retention-time prediction, chimeric/co-fragmenting spectrum search, and TMT/label-free quantification at scale; cloud-native with S3/GCS/Azure streaming, Percolator/Mokapot-compatible output, and integration into quantms and OpenMS pipelines, widely adopted in AI-driven proteomics workflows (312+ stars, MIT License, actively maintained)
Biomedical Model Context Protocol (MCP) server unifying literature search across PubMed/Europe PMC, entity pivoting across genes/variants/drugs/diseases/pathways/proteins, local study analytics, and Claude Code/Codex integration for agentic biomedical research (531+ stars, MIT License, 2025-2026)
Open-source, local-first desktop AI research workbench for scientific computing with Python/R, MCP bioinformatics tools, SSH/WSL/GPU runtimes, and OpenAI/Anthropic models (857+ stars, 2026)