Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

470 of 7,050 resources

Showing 351–400

🚀 Meerkat-7B-v1.0 is an instruction-tuned medical AI system that surpasses the passing threshold of 60% for the United States Medical Licensing Examination (USMLE) for the first time among all 7B-parameter models. The model was trained using our new synthetic dataset consisting of high-quality…

Idle921 year ago
Python

This is https://huggingface.co/kingabzpro/Qwen-3-32B-Medical-Reasoning applied to https://huggingface.co/Qwen/Qwen3-32B Original model card created by @kingabzpro

Idle3421 year ago
Python

GP-MoLFormer is a class of models pretrained on SMILES string representations of 0.65-1.1B molecules from ZINC and PubChem. This repository is for the model pretrained on all the unique molecules from both datasets.

Idle1.5K1 year ago
Python

## Model Description EYE-Llama_gqa is a large language model specifically designed for ophthalmic question-answering (QA). It is built upon the Llama 2 architecture and fine-tuned on a the EYE-lit and EYE-QA+ dataset.

Idle1651 year ago
Python

This model card describes the ClinicalBERT model, which was trained on a large multicenter dataset with a large corpus of 1.2B words of diverse diseases we constructed. We then utilized a large-scale corpus of EHRs from over 3 million patient records to fine tune the base language model.

Idle17.1K1 year ago
Python

This project fine-tunes the meta-llama/Llama-4-Scout-17B-16E-Instruct model using a medical reasoning dataset (FreedomIntelligence/medical-o1-reasoning-SFT) with 4-bit quantization for memory-efficient training.

Idle01 year ago
Python

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Idle2771 year ago
Python

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Idle841 year ago
Python

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Idle271 year ago
Python

This deep learning model is designed for ECG image classification, fine-tuned using ResNet-50. It can classify ECG images into different categories to assist in heart disease detection.

Idle41 year ago
Python

If you are unsure how to use GGUF files, refer to one of TheBloke's READMEs for more details, including on how to concatenate multi-part files.

Idle2.7K1 year ago
Python

This model summarizes radiology findings into accurate, informative impressions to improve radiologist-clinician communication.

Idle421 year ago
Python

Diabetica: Adapting Large Language Model to Enhance Multiple Medical Tasks in Diabetes Care and Management

Idle711 year ago
Python

View label scheme (20 labels for 1 components)

Idle391 year ago
Python

PPTStab: Prediction and Designing of thermostable proteins with a desired melting temperature

Idle01 year ago
Python

INDUS-Retriever-small (previously nasa-smd-ibm-st.38m) is a Bi-encoder sentence transformer model, that is fine-tuned from distilled version of nasa-smd-ibm-v0.1 encoder model. it is a smaller version of nasa-smd-ibm-st with better performance, using fewer parameters (shown below).

Idle111 year ago
Python

If you are unsure how to use GGUF files, refer to one of TheBloke's READMEs for more details, including on how to concatenate multi-part files.

Idle6851 year ago
Python

## Example Usage ```python from transformers import AutoTokenizer, T5ForConditionalGeneration

Idle1911 year ago
Python

The Gradio Web UI allows you to use our examples or upload your images for inference.

Idle11 year ago
Python

This model is a high-performance Named Entity Recognition (NER) model designed specifically for medical text. It identifies entities such as diseases, symptoms, procedures, medications, and healthcare providers with high precision and recall, making it ideal for clinical and healthcare applications.

Idle281 year ago
Python

# GPN trained on Arabidopsis thaliana and 7 other Brassicales See https://github.com/songlab-cal/gpn for more details.

Idle5861 year ago
Python

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Idle6041 year ago
Python

The Clinical Assertion and Negation Classification BERT is introduced in the paper Assertion Detection in Clinical Notes: Medical Language Models to the Rescue? . The model helps structure information in clinical patient letters by classifying medical conditions mentioned in the letter into…

Idle1.5K1 year ago
Python

Model from this repo. Model used to be in Dropbox/GDrive, leading to issues with download

Idle141 year ago
Python

# FremyCompany/BioLORD-2023 This model was trained using BioLORD, a new pre-training strategy for producing meaningful representations for clinical sentences and biomedical concepts.

Idle431.8K1 year ago
Python

# FremyCompany/BioLORD-2023-M This model was trained using BioLORD, a new pre-training strategy for producing meaningful representations for clinical sentences and biomedical concepts.

Idle37.1K1 year ago
Python

# MMedS-Llama3 💻Github Repo 🖨️arXiv Paper

Idle9481 year ago
Python

### Welcome to Nidum! At Nidum, we believe in pushing the boundaries of innovation by providing advanced and unrestricted AI models for every application. Dive into our world of possibilities and experience the freedom of Nidum-Llama-3.2-3B-Uncensored, tailored to meet diverse needs with…

Idle4.3K1 year ago
Python

If you are unsure how to use GGUF files, refer to one of TheBloke's READMEs for more details, including on how to concatenate multi-part files.

Idle1.2K1 year ago
Python

If you are unsure how to use GGUF files, refer to one of TheBloke's READMEs for more details, including on how to concatenate multi-part files.

Idle1921 year ago
Python

We identified and fixed an issue related to a wrong permutation of some projections, which affects generation quality. To use the new model revision, please load as follows:

Idle2K1 year ago
Python

If you are unsure how to use GGUF files, refer to one of TheBloke's READMEs for more details, including on how to concatenate multi-part files.

Idle5331 year ago
Python

This model aims to be a base template for new models. It has been generated using this raw template.

Idle1291 year ago
Python

The plant DNA large language models (LLMs) contain a series of foundation models based on different model architectures, which are pre-trained on various plant reference genomes. All the models have a comparable model size between 90 MB and 150 MB, BPE tokenizer is used for tokenization and 8000…

Idle3171 year ago
Python

Indus (previously known as nasa-smd-ibm-v0.1) is a RoBERTa-based, Encoder-only transformer model, domain-adapted for NASA Science Mission Directorate (SMD) applications. It's fine-tuned on scientific journals and articles relevant to NASA SMD, aiming to enhance natural language technologies like…

Idle551 year ago
Python

Indus-Retriever (nasa-smd-ibm-st-v2) is a Bi-encoder sentence transformer model, that is fine-tuned from nasa-smd-ibm-v0.1 encoder model. it is an updated version of nasa-smd-ibm-st with better performance (shown below). It's trained with 271 million examples along with a domain-specific dataset of…

Idle1.6K1 year ago
Python

MediFlow se trata de un modelo inicializado con xlnet-large-cased y adaptado con preguntas y especialidades para poder realizar Derivaciones Automatizadas en Servicios Hospitalarios. El dataset se puede encontrar de manera pública y se trata de MedDialog EN.

Stale62 years ago
Python

If you are unsure how to use GGUF files, refer to one of TheBloke's READMEs for more details, including on how to concatenate multi-part files.

Stale3812 years ago
Python

> [!IMPORTANT] > Better using New version of ChemLLM! > AI4Chem/ChemLLM-7B-Chat-1.5-DPO or AI4Chem/ChemLLM-7B-Chat-1.5-SFT

Stale1.1K2 years ago
Python

Chemma-2B is a continually pretrained gemma-2b model for organic molecules. It is pretrained on 40B tokens covering 110M+ molecules from PubChem as well as their chemical properties (molecular weight, synthetic accessibility score, drug-likeness etc.) and similarities (Tanimoto distance between…

Stale472 years ago
Python

## Quick Start ```Python from transformers import AutoTokenizer, AutoModel

Stale382 years ago
Python

ChemFIE-SA is a BERT-like sequence classifier for predicting synthesis accessibility given a SELFIES string of a compound, fine-tuned from gbyuvd/chemselfies-base-bertmlm on DeepSA's expanded dataset from Wang et al. 2023.

Stale92 years ago
Python

This model is a BERT-like sequence classifier for 221 human protein drug targets, fine-tuned from gbyuvd/chemselfies-base-bertmlm on a dataset derived ChemBL34 (Zdrazil et al. 2023). It predicts potential drug targets using chemical structures represented as SELFIES (Self-Referencing Embedded…

Stale382 years ago
Python

The Mistral-DNA-v1-138M-bacteria Large Language Model (LLM) is a pretrained generative DNA text model with 17.31M parameters x 8 experts = 138.5M parameters. It is derived from Mistral-7B-v0.1 model, which was simplified for DNA: the number of layers and the hidden size were reduced.

Stale162 years ago
Python

Model Card for "medllama" ---------------------------

Stale152 years ago
Python

This is a ReactionT5 pre-trained to predict the products of reactions.

Stale1842 years ago
Python

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Stale8.5K2 years ago
Python

## Model Overview AgroNT is a DNA language model trained on primarily edible plant genomes. More specifically, AgroNT uses the transformer architecture with self-attention and a masked language modeling objective to leverage highly available genotype data from 48 different plant speices to learn…

Stale4.2K2 years ago
Python

If you are unsure how to use GGUF files, refer to one of TheBloke's READMEs for more details, including on how to concatenate multi-part files.

Stale3362 years ago
Python