Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

470 of 7,050 resources

Showing 251–300

Unsloth Dynamic 2.0 achieves superior accuracy & outperforms other leading quants.

Idle19.4K8 months ago
Python

PII Detection Model | 44M Parameters | Open Source

Idle27K8 months ago
Python

PII Detection Model | 434M Parameters | Open Source

Idle105.4K8 months ago
Python

This is a MobileViT (Small) model fine-tuned on the Processed Diabetic Retinopathy dataset.

Idle49 months ago
Python

> [!NOTE] > Inspired by the thought of: what if you could speak to an offline medical assistant that doesn't decline to answer some of your questions?

Idle269 months ago
Python

The MediPhi Model Collection comprises 7 small language models of 3.8B parameters from the base model Phi-3.5-mini-instruct specialized in the medical and clinical domains. The collection is designed in a modular fashion. Five MediPhi experts are fine-tuned on various medical corpora (i.e.

Idle3259 months ago
Python

The MediPhi Model Collection comprises 7 small language models of 3.8B parameters from the base model Phi-3.5-mini-instruct specialized in the medical and clinical domains. The collection is designed in a modular fashion. Five MediPhi experts are fine-tuned on various medical corpora (i.e.

Idle5859 months ago
Python

The MediPhi Model Collection comprises 7 small language models of 3.8B parameters from the base model Phi-3.5-mini-instruct specialized in the medical and clinical domains. The collection is designed in a modular fashion. Five MediPhi experts are fine-tuned on various medical corpora (i.e.

Idle1329 months ago
Python

The MediPhi Model Collection comprises 7 small language models of 3.8B parameters from the base model Phi-3.5-mini-instruct specialized in the medical and clinical domains. The collection is designed in a modular fashion. Five MediPhi experts are fine-tuned on various medical corpora (i.e.

Idle1K9 months ago
Python

The MediPhi Model Collection comprises 7 small language models of 3.8B parameters from the base model Phi-3.5-mini-instruct specialized in the medical and clinical domains. The collection is designed in a modular fashion. Five MediPhi experts are fine-tuned on various medical corpora (i.e.

Idle2K9 months ago
Python

## Description: Geneformer is a foundational transformer model pretrained on a large-scale corpus of single-cell transcriptomes to enable context-specific predictions in settings with limited data in network biology.

Idle1819 months ago
Python

## Description: Geneformer is a foundational transformer model pretrained on a large-scale corpus of single-cell transcriptomes to enable context-specific predictions in settings with limited data in network biology. This model version was continually pretrained on ~14 million cancer transcriptomes…

Idle169 months ago
Python

## Description: Geneformer is a foundational transformer model pretrained on a large-scale corpus of single-cell transcriptomes to enable context-specific predictions in settings with limited data in network biology.

Idle3079 months ago
Python

## Description: Geneformer is a foundational transformer model pretrained on a large-scale corpus of single-cell transcriptomes to enable context-specific predictions in settings with limited data in network biology.

Idle179 months ago
Python

For a convenient overview and download list, visit our model page for this model.

Idle16610 months ago
Python

Support our open-source dataset and model releases!

Idle6010 months ago
Python

Hulu-Med: A Transparent Generalist Model towards Holistic Medical Vision-Language Understanding

Idle4.5K10 months ago
Python

Large Language and Vision Assistant for bioMedicine (i.e., “LLaVA-Med”) is a large language and vision model trained using a curriculum learning method for adapting LLaVA to the biomedical domain. It is an open-source release intended for research use only to facilitate reproducibility of the…

Idle9.9K10 months ago
Python

This model was added by Hugging Face staff.

Idle29410 months ago
Python

BulkRNABert is a transformer-based, encoder-only language model pre-trained on bulk RNA-seq profiles from the TCGA dataset using self-supervised masked language modeling, following the original BERT framework. The model is trained to reconstruct randomly masked gene expression values from their…

Idle26911 months ago
Python

ChemFIE-BED is a sentence-transformers based on gbyuvd/chemselfies-base-bertmlm fine-tuned on around (for now) 2 million pairs of valid molecules' SELFIES (Krenn et al. 2020) taken from COCONUTDB (Sorokina et al. 2021) and ChemBL34 (Zdrazil et al. 2023).

Idle9511 months ago
Python

GitHub homepage: Cell2Sentence GitHub

Idle1.5K11 months ago
Python
Idle891.3K11 months ago
Python

This model is a fine-tuned version of google/medgemma-4b-it adapted for binary mammogram classification on the OMAMA 256×256 dataset. The dataset consists of ~154k mammogram image slices (.npz) with metadata JSONs providing labels (NonCancer, Cancer).

Idle1511 months ago
Python

For a convenient overview and download list, visit our model page for this model.

Idle46811 months ago
Python

!Main Image

Idle23211 months ago
Python

The Nucleotide Transformers are a collection of foundational language models that were pre-trained on DNA sequences from whole-genomes. Compared to other approaches, our models do not only integrate information from single reference genomes, but leverage DNA sequences from over 3,200 diverse human…

Idle14.1K11 months ago
Python

DermLIP is a vision-language model for dermatology, trained on the Derm1M dataset—the largest dermatological image-text corpus to date. This model variant (PanDerm-base-w-PubMed-256) utilizes domain-specific pretraining to deliver superior performance compared to other DermLIP variants..

Idle12911 months ago
Python

MedVAL-4B (medical text validator) is a language model fine-tuned to assess AI-generated medical text outputs at near physician-level reliability.

Idle2031 year ago
Python

This model is a lightweight model pre-trained on SELFIES (Self-Referencing Embedded Strings) representations of molecules. It is trained on 2.7M unique and valid molecules taken from COCONUTDB and ChemBL34, with 7.3M total generated masked examples.

Idle541 year ago
Python

> [!NOTE] > This model has been optimized using NVIDIA's TransformerEngine > library. Slight numerical differences may be observed between the original model and the optimized > model. For instructions on how to install TransformerEngine, please refer to the > official documentation.

Idle341 year ago
Python

> [!NOTE] > This model has been optimized using NVIDIA's TransformerEngine > library. Slight numerical differences may be observed between the original model and the optimized > model. For instructions on how to install TransformerEngine, please refer to the > official documentation.

Idle5831 year ago
Python

Here is the pretrained version of PolyTAO, the first pretrained generative language model for polymer design.

Idle1051 year ago
Python

Website    🤖 7B Model    🤖 32B Model    MedEvalKit    Technical Report    Lingshu MCP

Idle7061 year ago
Python

Website    🤖 7B Model    🤖 32B Model    MedEvalKit    Technical Report    Lingshu MCP

Idle7.1K1 year ago
Python

The Nucleotide Transformers are a collection of foundational language models that were pre-trained on DNA sequences from whole-genomes. Compared to other approaches, our models do not only integrate information from single reference genomes, but leverage DNA sequences from over 3,200 diverse human…

Idle2.9K1 year ago
Python

The Nucleotide Transformers are a collection of foundational language models that were pre-trained on DNA sequences from whole-genomes. Compared to other approaches, our models do not only integrate information from single reference genomes, but leverage DNA sequences from over 3,200 diverse human…

Idle17.9K1 year ago
Python
Idle3821 year ago
Python

Palmyra-Med, a powerful LLM designed for healthcare

Idle531 year ago
Python

中文版说明

Idle1471 year ago
Python

Neeto-1.0-8b is an openly released biomedical large language model (LLM) created by BYOL Academy to assist learners and practitioners with medical exam study, literature understanding, and structured clinical reasoning.

Idle7.7K1 year ago
Python

This is a ReactionT5 pre-trained to predict the products of reactions. You can use the demo here.

Idle2K1 year ago
Python

This is a ReactionT5 pre-trained to predict the reactants of reactions. You can use the demo here.

Idle1.7K1 year ago
Python

This repos contains the biomedicine MLLM developed from Qwen2.5-VL-3B-Instruct in our paper: On Domain-Adaptive Post-Training for Multimodal Large Language Models. The correspoding training dataset is in biomed-visual-instructions.

Idle1211 year ago
Python

# Position-based Equivariant Graph Neural Network (pos-egnn) This repository contains PyTorch model for loading and performing inference using the pos-egnn, a foundation model for Chemistry and Materials.

Idle561 year ago
Python

Specialized model for Chemical Entity Recognition - Identifies chemical compounds and substances in biomedical literature

Idle711 year ago
Python