AIRI-Institute/genatator-pipeline
https://huggingface.co/AIRI-Institute/genatator-pipelineGENATATOR-PIPELINE is a Hugging Face pipeline for ab initio gene annotation from genomic DNA. It accepts a FASTA file, finds candidate transcript intervals, assigns transcript type, predicts exon and CDS structure, and writes a GFF3 annotation file.
Sourced from
- HuggingFace — AIRI-Institute/genatator-pipeline
Related resources
ConvergeBio/virtual-cell-patient
by ConvergeBioA patient-level disease classification model trained on single-cell RNA-seq data. Given a matrix of gene expression profiles (one row per cell), the model produces a disease-category prediction for the patient.
PlantGeneAnn is a plant genome foundation model that enables the prediction of various plant genomic elements at single-nucleotide resolution. The model is built upon the PlantBiMoE architecture with a 1D U-Net segmentation head, specifically designed for automated plant genome annotation.
zhihan1996/DNABERT-S
by zhihan1996Hengchang-Liu/D3LM-from-nt
by Hengchang-LiuThis repository contains the model presented in D3LM: A Discrete DNA Diffusion Language Model for Bidirectional DNA Understanding and Generation.