Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

477 of 7,078 resources

Showing 251–300

From Inquiry to Decision: Building Trustworthy Medical AI

Idle208 months ago
Python

A Neural Machine Translation (NMT) model based on a custom Transformer (Encoder-Decoder) architecture, trained from scratch. This model is designed to translate English sentences into Hebrew using multilingual encoding and specialized layer configurations.

Idle118 months ago
Python

WiNGPT 是一个基于GPT的医疗垂直领域大模型,旨在将专业的医学知识、医疗信息、数据融会贯通,为医疗行业提供智能化的医疗问答、诊断支持和医学知识等信息服务,提高诊疗效率和医疗服务质量。

Idle8.1K8 months ago
Python

Matěj Pekár, Vít Musil, Rudolf Nenutil, Petr Holub, Tomáš Brázdil

Idle3168 months ago
Python

AVAILABLE NOW THE LATEST ITERATION OF THE ALOE FAMILY! ALOE BETA 8B AND ALOE BETA 70B VERSIONS. These include: Better overall performance More thorough alignment and safety * License compatible with more uses

Idle4998 months ago
Python

Aloe: A Family of Fine-tuned Open Healthcare LLMs

Idle1.3K8 months ago
Python

Unsloth Dynamic 2.0 achieves superior accuracy & outperforms other leading quants.

Idle17.7K9 months ago
Python

PII Detection Model | 44M Parameters | Open Source

Idle27K9 months ago
Python

PII Detection Model | 434M Parameters | Open Source

Idle105.4K9 months ago
Python

This is a MobileViT (Small) model fine-tuned on the Processed Diabetic Retinopathy dataset.

Idle49 months ago
Python

> [!NOTE] > Inspired by the thought of: what if you could speak to an offline medical assistant that doesn't decline to answer some of your questions?

Idle269 months ago
Python

The MediPhi Model Collection comprises 7 small language models of 3.8B parameters from the base model Phi-3.5-mini-instruct specialized in the medical and clinical domains. The collection is designed in a modular fashion. Five MediPhi experts are fine-tuned on various medical corpora (i.e.

Idle3259 months ago
Python

The MediPhi Model Collection comprises 7 small language models of 3.8B parameters from the base model Phi-3.5-mini-instruct specialized in the medical and clinical domains. The collection is designed in a modular fashion. Five MediPhi experts are fine-tuned on various medical corpora (i.e.

Idle5859 months ago
Python

The MediPhi Model Collection comprises 7 small language models of 3.8B parameters from the base model Phi-3.5-mini-instruct specialized in the medical and clinical domains. The collection is designed in a modular fashion. Five MediPhi experts are fine-tuned on various medical corpora (i.e.

Idle1329 months ago
Python

The MediPhi Model Collection comprises 7 small language models of 3.8B parameters from the base model Phi-3.5-mini-instruct specialized in the medical and clinical domains. The collection is designed in a modular fashion. Five MediPhi experts are fine-tuned on various medical corpora (i.e.

Idle1K9 months ago
Python

The MediPhi Model Collection comprises 7 small language models of 3.8B parameters from the base model Phi-3.5-mini-instruct specialized in the medical and clinical domains. The collection is designed in a modular fashion. Five MediPhi experts are fine-tuned on various medical corpora (i.e.

Idle2K9 months ago
Python

## Description: Geneformer is a foundational transformer model pretrained on a large-scale corpus of single-cell transcriptomes to enable context-specific predictions in settings with limited data in network biology.

Idle1819 months ago
Python

## Description: Geneformer is a foundational transformer model pretrained on a large-scale corpus of single-cell transcriptomes to enable context-specific predictions in settings with limited data in network biology. This model version was continually pretrained on ~14 million cancer transcriptomes…

Idle1610 months ago
Python

## Description: Geneformer is a foundational transformer model pretrained on a large-scale corpus of single-cell transcriptomes to enable context-specific predictions in settings with limited data in network biology.

Idle30710 months ago
Python

## Description: Geneformer is a foundational transformer model pretrained on a large-scale corpus of single-cell transcriptomes to enable context-specific predictions in settings with limited data in network biology.

Idle1710 months ago
Python

For a convenient overview and download list, visit our model page for this model.

Idle16610 months ago
Python

Support our open-source dataset and model releases!

Idle6010 months ago
Python

Hulu-Med: A Transparent Generalist Model towards Holistic Medical Vision-Language Understanding

Idle4.5K10 months ago
Python

Large Language and Vision Assistant for bioMedicine (i.e., “LLaVA-Med”) is a large language and vision model trained using a curriculum learning method for adapting LLaVA to the biomedical domain. It is an open-source release intended for research use only to facilitate reproducibility of the…

Idle9.9K10 months ago
Python

This model was added by Hugging Face staff.

Idle29410 months ago
Python

BulkRNABert is a transformer-based, encoder-only language model pre-trained on bulk RNA-seq profiles from the TCGA dataset using self-supervised masked language modeling, following the original BERT framework. The model is trained to reconstruct randomly masked gene expression values from their…

Idle26911 months ago
Python

ChemFIE-BED is a sentence-transformers based on gbyuvd/chemselfies-base-bertmlm fine-tuned on around (for now) 2 million pairs of valid molecules' SELFIES (Krenn et al. 2020) taken from COCONUTDB (Sorokina et al. 2021) and ChemBL34 (Zdrazil et al. 2023).

Idle11311 months ago
Python

GitHub homepage: Cell2Sentence GitHub

Idle1.5K11 months ago
Python
Idle798.5K11 months ago
Python

This model is a fine-tuned version of google/medgemma-4b-it adapted for binary mammogram classification on the OMAMA 256×256 dataset. The dataset consists of ~154k mammogram image slices (.npz) with metadata JSONs providing labels (NonCancer, Cancer).

Idle1511 months ago
Python

For a convenient overview and download list, visit our model page for this model.

Idle46811 months ago
Python

!Main Image

Idle23211 months ago
Python

The Nucleotide Transformers are a collection of foundational language models that were pre-trained on DNA sequences from whole-genomes. Compared to other approaches, our models do not only integrate information from single reference genomes, but leverage DNA sequences from over 3,200 diverse human…

Idle14.1K11 months ago
Python

DermLIP is a vision-language model for dermatology, trained on the Derm1M dataset—the largest dermatological image-text corpus to date. This model variant (PanDerm-base-w-PubMed-256) utilizes domain-specific pretraining to deliver superior performance compared to other DermLIP variants..

Idle12912 months ago
Python

MedVAL-4B (medical text validator) is a language model fine-tuned to assess AI-generated medical text outputs at near physician-level reliability.

Idle2031 year ago
Python

This model is a lightweight model pre-trained on SELFIES (Self-Referencing Embedded Strings) representations of molecules. It is trained on 2.7M unique and valid molecules taken from COCONUTDB and ChemBL34, with 7.3M total generated masked examples.

Idle601 year ago
Python

> [!NOTE] > This model has been optimized using NVIDIA's TransformerEngine > library. Slight numerical differences may be observed between the original model and the optimized > model. For instructions on how to install TransformerEngine, please refer to the > official documentation.

Idle341 year ago
Python

> [!NOTE] > This model has been optimized using NVIDIA's TransformerEngine > library. Slight numerical differences may be observed between the original model and the optimized > model. For instructions on how to install TransformerEngine, please refer to the > official documentation.

Idle5831 year ago
Python

Here is the pretrained version of PolyTAO, the first pretrained generative language model for polymer design.

Idle1051 year ago
Python

Website    🤖 7B Model    🤖 32B Model    MedEvalKit    Technical Report    Lingshu MCP

Idle7061 year ago
Python

Website    🤖 7B Model    🤖 32B Model    MedEvalKit    Technical Report    Lingshu MCP

Idle7.1K1 year ago
Python

The Nucleotide Transformers are a collection of foundational language models that were pre-trained on DNA sequences from whole-genomes. Compared to other approaches, our models do not only integrate information from single reference genomes, but leverage DNA sequences from over 3,200 diverse human…

Idle2.9K1 year ago
Python

The Nucleotide Transformers are a collection of foundational language models that were pre-trained on DNA sequences from whole-genomes. Compared to other approaches, our models do not only integrate information from single reference genomes, but leverage DNA sequences from over 3,200 diverse human…

Idle17.9K1 year ago
Python
Idle3821 year ago
Python

Palmyra-Med, a powerful LLM designed for healthcare

Idle531 year ago
Python

中文版说明

Idle1471 year ago
Python