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protein-encoded genomic data. It identifies orthologous genes using HMM profiles

OpenOncology is an open-source platform for precision oncology, designed

Processes 96-well plate absorbance data through blank subtraction, regression

protein representation learning, providing standardized interfaces for pre-training and diverse

Plans geometric serial dilution series for molecular biology and biochemistry

protein entries, plus dilution and ligation calculation modes through one API-backed

Performs laboratory unit conversions across molarity, OD600 cell density, C

NovoTax is an end-to-end pipeline designed to identify

Comprehensive collection of 125+ ready-to-use scientific skill modules

RFantibody is a pipeline for structure-based de novo antibody

Open-source hybrid scientific research agent and workbench replicating Claude

AlloPipe is a bioinformatics tool designed to identify candidate minor

Autonomous ML experimentation for biomedical data.

Turn any AI agent into an AI Scientist. The #1

protein design framework integrating Boltz, AlphaFold2, OpenFold3, ProteinMPNN, and ESM via JAX-based

entities, diseases and phenotypes, genes and proteins and many others.

PyTorch framework for training neural network interatomic potentials with the

protein language-model features, orthology, curated knowledge, protein association networks

protein interaction networks, and scientific knowledge graph learning (23.7k+ stars

protein conformational changes and characterize ligand dissociation pathways. It enables

StaphScope is an automated, locally-executable computational pipeline designed specifically

AcinetoScope is an automated, comprehensive bioinformatics pipeline designed specifically for

protein equilibrium conformations 100,000× faster than MD simulations, predicting

protein sequence variants. It is used to convey variants in clinical

Curated library of 550+ medical research agent skills spanning evidence

MetaTracer is a nucleotide alignment-based framework that analyzes complex

protein identifiers (TXT, CSV, TSV, XLSX). It maps approved symbols

protein folding model using only general-purpose transformer layers, scaled

protein (RBP) binding motifs. RBPBench can be used for a variety

Predicts transcription factor binding sites in up to 316 vertebrate

Protein Data Bank structures into 3D-printable models. Each polymer

Local Python sequence utilities for nucleotide composition, DNA and RNA

protein structures. Membrane Visual QC provides planar membrane-relative geometry

protein engineering, and single-cell omics analysis (PharMolix & Tsinghua

Curated, multilingual library of 182 installable AI agent skills for

protein-language-model-informed token space; enables zero-shot cell

Long-context generative genomic foundation model using 6-mer tokenization

protein target sequences. The mirnaprotpred package provides two core modules

Cross-platform system optimizations for accelerating AlphaFold3 training with 1.73

Learning the language of protein-protein interactions

protein structure determination from electron density with high accuracy (3DEM/EMBL

proteins via backpropagation through compositional design constraints parameterized by structure

First fully open-source model achieving AlphaFold3-level accuracy with

CGAS is an automated Python-based pipeline providing a comprehensive

gMISpy is a Python package designed to compute genetic Minimal

bifidoAnnotator is a bioinformatics tool designed for fine-grained annotation

Tool to build force field input files for molecular simulation

protein conformational ensembles, covering both experimental PDB states and molecular