Find open-source science resources
A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
Filters
Health
Domain
Language(1)
License(1)
Source(1)
Type
4 of 6,573 resources
From https://anndata.readthedocs.io/en/latest/ "Python package for handling annotated data matrices in memory and on disk, positioned between pandas and xarray."
Trackastra is a transformer-based cell-tracking tool for live-cell microscopy. It links already segmented cell instances across time by predicting associations between detections. It supports greedy tracking with or without cell divisions, optional ILP-based linking, pretrained tracking models, and export of tracked masks and lineage information in Cell Tracking Challenge format.
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
Content-Aware Image Restoration for Cryo-Transmission Electron Microscopy Data