Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

15 of 7,765 resources matching “protein”

DiscrimAlign is a statistical model designed for discriminative learning of

Active21 week ago
Jupyter Notebook
MIT

representations of protein and RNA structures, and biological interaction networks.

Active1.2K1 month ago
Jupyter Notebook
MIT

protein binder design pipeline using AlphaFold2 backpropagation, MPNN, and PyRosetta

Active1.2K1 month ago
Jupyter Notebook
MIT

AlphaFold/ESMFold accessible implementation with AF3 JSON export, database updates

Active2.9K1 month ago
Jupyter Notebook
MIT

Benchmark evaluating AI agents for end-to-end automated research

Active2641 month ago
Jupyter Notebook
MIT

AESTETIK is a deep learning model that jointly integrates spatial

Active282 months ago
Jupyter Notebook
MIT

Protein Language Models (PLMs). It uses trainable subnetworks to isolate

Active74 months ago
Jupyter Notebook
MIT

protein engineering. It orchestrates a unified ecosystem of specialized tools

Idle746 months ago
Jupyter Notebook
MIT

protein language model translating between protein sequence and structure, finetuned

Idle3268 months ago
Jupyter Notebook
MIT

methods for predicting Enzyme Commission (EC) numbers from protein sequences.

Idle89 months ago
Jupyter Notebook
MIT

protein-ligand complex structures with dynamic receptor conformational flexibility, enabling

Idle31010 months ago
Jupyter Notebook
MIT

Family of generative single-cell foundation models (TF-Metazoa, TF

Idle1661 year ago
Jupyter Notebook
MIT

RNA foundation model trained on millions of RNA sequences for

Idle3941 year ago
Jupyter Notebook
MIT

proteins trained on thousands of GPUs and Google TPUs using

Idle1.3K1 year ago
Jupyter Notebook
MIT

protein sequence design (inverse folding) from backbone structures, achieving 52.4% sequence

Stale1.9K2 years ago
Jupyter Notebook
MIT