ProtTrans

github.com/agemagician/prottrans
Idle1.3Kupdated 1 year ago
Jupyter Notebook
MIT

State-of-the-art pretrained language models for proteins trained on thousands of GPUs and Google TPUs using Transformer architectures, enabling protein property prediction, feature extraction, and transfer learning across diverse downstream tasks (1.3K+ stars, MIT, 2020-2026)

Sourced from

  • GitHub — github.com/agemagician/prottrans
  • Awesome AI for Science — github.com/agemagician/prottrans

Related resources

Protein structure prediction

Idle14.9K6 months ago
Python
Apache-2.0

AlphaFold 3 inference pipeline for unified biomolecular structure prediction of proteins, nucleic acids, small molecules, ions, and post-translational modifications (Google DeepMind, Nature 2024)

Active8.6K2 weeks ago
Python
Apache-2.0

Deep learning library for Chemistry based on Tensorflow

Active7K2 months ago
Python
MIT

First fully open-source model achieving AlphaFold3-level accuracy with 1000x faster binding affinity prediction (MIT)

Active4.2K4 months ago
Python
MIT

Protein structure prediction from ESM models

Archived4.2K2 years ago
Python
MIT

Cheminformatics toolkit

Active3.6K4 weeks ago
HTML
BSD-3-Clause