Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

65 of 7,068 resources

Showing 51–65

This vocabulary allows multi-dimensional data, such as statistics, to be published in RDF. It is based on the core information model from SDMX (and thus also DDI).

Idle131 year ago
HTML

A concept scheme that defines the types of relationships between a learning resource and a node in an educational framework.

Stale272 years ago
HTML

BioCompute is shorthand for the IEEE 2791-2020 standard for Bioinformatics Analyses Generated by High-Throughput Sequencing (HTS) to facilitate communication. This pipeline documentation approach has been adopted by a few FDA centers. The goal is to ease the communication burdens between research centers, organizations, and industries. This web portal allows users to build a BioCompute Objects through the interface in a human and machine readable format.

Stale172 years ago
HTML
BSD-3-Clause

An ontology of processes triggered by homeostatic imbalance, with a focus on COVID-19 infectious processes.

Stale52 years ago
HTML
CC-BY-4.0
Stale04 years ago
HTML

An educational ontology for personalised recommendation learning systems that is based on learning path and user profile. It represents the key components for a personalised learning system based on our requirement analysis.

Stale165 years ago
HTML
CC0-1.0
Stale685 years ago
HTML

Web tool which allows users to upload their own data and easily create Principal Component Analysis (PCA) plots and heatmaps. Data can be uploaded as a file or by copy-pasteing it to the text box.

Stale566 years ago
HTML

This ontology defines a taxonomy of software functions based on the work of the NSF-funded EarthCube Resource Registry working group. The functions are generally organized by their role in the research process.

Stale06 years ago
HTML

This mini-ontology contains classes and instances for each version of the licenses that are commonly used in software projects, particularly open source software projects. The URI's for each are the canonical URI's for that license (where they exist).

Stale06 years ago
HTML

An OWL 2 DL ontology developed for creating sets, bags and lists of resources, and for inferring collection properties even in the presence of incomplete information.

Stale147 years ago
HTML

TogoID is an ID conversion service implementing unique features with an intuitive web interface and an API for programmatic access. TogoID supports datasets from various biological categories such as gene, protein, chemical compound, pathway, disease, etc. TogoID users can perform exploratory multistep conversions to find a path among IDs. To guide the interpretation of biological meanings in the conversions, we crafted an ontology that defines the semantics of the dataset relations. (from https://togoid.dbcls.jp/)

Stale27 years ago
HTML

The Shape Expressions (ShEx) language describes RDF nodes and graph structures. A node constraint describes an RDF node (IRI, blank node or literal) and a shape describes the triples involving nodes in an RDF graph. These descriptions identify predicates and their associated cardinalities and datatypes. ShEx shapes can be used to communicate data structures associated with some process or interface, generate or validate data, or drive user interfaces.

Stale17 years ago
HTML

LogiCO contains the core concepts and properties used in the logistics domain, and mappings (as annotations) to UN/EDIFACTS Data elements.

Stale010 years ago
HTML