Find open-source science resources
A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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11 of 5,923 resources
Ultra-fast, sensitive search and clustering suite for protein and nucleotide sequence sets.
A compressor of common genomic file formats (BAM, CRAM, FASTQ, VCF etc).
samtools/bcftools are a suite of tools for manipulating NGS data and can be used to call variants.
BWA-MEM drop-in replacement: 2-3x faster, 2-5x cheaper, 100% identical output on standard CPUs.
lumpy: a general probabilistic framework for structural variant discovery.
SIMD C library for global, semi-global, and local pairwise sequence alignments
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences.
A fuzzy Bruijn graph approach to long noisy reads assembly
FASTQ/A short-reads pre-processing tools: Demultiplexing, trimming, clipping, quality filtering, and masking utilities.