SAMstat

github.com/timolassmann/samstat
Stale25updated 3 years ago
C
NOASSERTION

Displaying sequence statistics for next-generation sequencing.

Sourced from

  • GitHub — github.com/timolassmann/samstat
  • Awesome Bioinformatics — github.com/timolassmann/samstat

Related resources

Aggregate results from bioinformatics analyses across many samples into a single report.

Active1.5K1 month ago
JavaScript
GPL-3.0

Fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs.

Active3341 month ago
Nim
MIT

Finds SNP sites from a multi-FASTA alignment file.

Stale2795 years ago
C
NOASSERTION

Circlator is a tool to circularize genome assemblies. It will attempt to identify each circular sequence and output a linearised version of it. It does this by assembling all reads that map to contig ends and comparing the resulting contigs with the input assembly.

Stale2592 years ago
Python
NOASSERTION

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data.

Stale2136 years ago
Python
MIT

Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science with 140+ ready-to-use skills and 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Antigravity, and the open Agent Skills standard (K-Dense-AI, 26K+ stars, 2025)

Active48.8K1 week ago
Python
MIT