SAMstat

Aggregate results from bioinformatics analyses across many samples into a single report.

Fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs.

Finds SNP sites from a multi-FASTA alignment file.

Circlator is a tool to circularize genome assemblies. It will attempt to identify each circular sequence and output a linearised version of it. It does this by assembling all reads that map to contig ends and comparing the resulting contigs with the input assembly.

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data.

Comprehensive collection of 125+ ready-to-use scientific skill modules for Claude AI across bioinformatics, cheminformatics, clinical research, ML, and materials science