Find open-source science resources
A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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9 of 6,234 resources
A compressor of common genomic file formats (BAM, CRAM, FASTQ, VCF etc).
samtools/bcftools are a suite of tools for manipulating NGS data and can be used to call variants.
Minimap2 is an pairwise aligner for genomic and spliced nucleotide sequences. It can perform the assembly-to-assembly alignment, and works with gzip'd FASTQ, FASTA formats. It also finds overlaps between long-reads.
De novo assembler for single molecule sequencing reads using repeat graphs.
the wavefront alignment algorithm (WFA) which expoit sequence similarity to speed up alignment
SIMD C library for global, semi-global, and local pairwise sequence alignments
Displaying sequence statistics for next-generation sequencing.
FASTQ/A short-reads pre-processing tools: Demultiplexing, trimming, clipping, quality filtering, and masking utilities.
Finds SNP sites from a multi-FASTA alignment file.