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A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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8 of 7,094 resources
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.
A compressor of common genomic file formats (BAM, CRAM, FASTQ, VCF etc).
the wavefront alignment algorithm (WFA) which expoit sequence similarity to speed up alignment
Minimap2 is an pairwise aligner for genomic and spliced nucleotide sequences. It can perform the assembly-to-assembly alignment, and works with gzip'd FASTQ, FASTA formats. It also finds overlaps between long-reads.
De novo assembler for single molecule sequencing reads using repeat graphs.
SIMD C library for global, semi-global, and local pairwise sequence alignments
Displaying sequence statistics for next-generation sequencing.
FASTQ/A short-reads pre-processing tools: Demultiplexing, trimming, clipping, quality filtering, and masking utilities.