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A Standardized Processing Pipeline for Event-Related Potential Analyses.

Genomic Relatedness Detection Pipeline.

CIEVAD is a collection of Nextflow workflows designed to facilitate rapid and on-demand deployment of end-to-end testing of genomic variant detection. It allows for the generation of synthetic test data and the evaluation of variant sets against that data.

a computational workflow to study sex determination using Restriction Site-Associated DNA Sequencing data. Complete workflow to perform analyses and generate figures from the RADSex paper (https://www.biorxiv.org/content/10.1101/2020.04.22.054866v1). The radsex software is part of RADSex, a computational workflow for the analysis of sex-determination using RAD-Sequencing data. This workflow contains the software radsex and the R package sgtr; a Snakemake implementation of the workflow is available here. This workflow implements all the analyses presented in the RADSex paper and generates figures for each analyses as well as most figures included in the paper. Data is defined in data/info.tsv; reads are downloaded from the NCBI SRA repository and genomes are downloaded from provided links. All parameters are defined in config.yaml.

An automated pipeline for batch analysis of optical tweezers data.

An integrated, customizable microbial genome evaluation and annotation pipeline. Pipeline for major biological analyses. MetaSanity v1.1.1 - 2020 version. MetaSanity v1.1.1 provides a unified workflow for genome assessment and functional annotation that combines all outputs into a single queryable database – all within an easily distributed Docker image

A scalable workflow for the identification and analysis of phage sequences.

Automated and feedback-optimized on-the-fly processing for cryo-EM.

Differential abundance testing on single-cell data using k-NN graphs. Milo is a method for differential abundance analysis on KNN graph from single-cell datasets. For more details, read our preprint.