RADSex

a computational workflow to study sex determination using Restriction Site-Associated DNA Sequencing data. Complete workflow to perform analyses and generate figures from the RADSex paper (https://www.biorxiv.org/content/10.1101/2020.04.22.054866v1). The radsex software is part of RADSex, a computational workflow for the analysis of sex-determination using RAD-Sequencing data. This workflow contains the software radsex and the R package sgtr; a Snakemake implementation of the workflow is available here. This workflow implements all the analyses presented in the RADSex paper and generates figures for each analyses as well as most figures included in the paper. Data is defined in data/info.tsv; reads are downloaded from the NCBI SRA repository and genomes are downloaded from provided links. All parameters are defined in config.yaml.