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PanAbyss is a tool for exploring and visualizing pangenome graphs. It allows users to search for and display regions of a pangenome using coordinates on a reference individual or based on annotations. It also enables searching for regions associated with a selected set of individuals (for example, those linked to a phenotype), computing proximity trees, and retrieving sequences from a given region.

Git repo for Bio::DB::HTS module on CPAN, providing Perl links into HTSlib

RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.

SeqBench is a browser-based toolkit for DNA, RNA and protein sequence analysis: primer design, restriction digest and cloning simulation, CRISPR guide design, codon optimization, pairwise alignment and plasmid annotation. Supports batch FASTA processing and multi-tool workflow pipelines, and every tool is also exposed as a REST API and MCP server for scripted or agent-driven use. All computation runs client-side in the browser, so input sequences are never uploaded to a server.

Browser-based tool to open almost any sequence file — FASTA, FASTQ, GenBank, EMBL, Swiss-Prot, AB1/ABIF, SCF, Clustal, Stockholm, PHYLIP, NEXUS, MSF, PIR and more — see every sequence inside, pick the ones you want, and save them as FASTA. The format is detected from the file content, not from the extension, so unlabelled or misnamed files still open. Runs entirely in the browser — files are never uploaded.

Browser-based viewer for GenBank and GenPept files. Renders an interactive linear and circular feature map, the annotated source text, and the nucleotide/protein sequence side by side. Translates CDS features using the record's own genetic code and translation qualifiers, flags where the stored /translation disagrees with a plain translation, and adds optional computed layers: ORF prediction and restriction-site mapping. Handles multi-record files. Runs entirely in the browser — files are never uploaded.