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A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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PathForge is a modular benchmarking framework for multiple instance learning in computational pathology. It supports whole slide image feature extraction, HDF5 artifact generation, tile overviews, benchmarking, pipeline optimization, classification, regression, survival and retrieval tasks, and support for model inference and visualization.
PathBench-MIL is a comprehensive, flexible benchmarking/AutoML framework for multiple instance learning in histopathology. PathBench-MIL is expected to be deprecated and replaced by PathForge.