PathFlowAI

A High-Throughput Workflow for Preprocessing, Deep Learning and Interpretation in Digital Pathology | A Convenient High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology | MedRxiv Manuscript: https://www.medrxiv.org/content/10.1101/19003897v1 | Fig. 1. PathFlowAI Framework: a) Annotations and whole slide images are preprocessed in parallel using Dask; b) Deep learning prediction model is trained on the model; c) Results are visualized; d) UMAP embeddings provide diagnostics; e) SHAP framework is used to find important regions for the prediction