TypeTE

a tool to genotype mobile element insertions from whole genome resequencing data. Genotyping of segregating mobile elements insertions. This pipeline is developped by Jainy Thomas (University of Utah) and Clement Goubert (Cornell University). Elaborated with the collaboration of Jeffrey M. Kidd (University of Michigan). TypeTE is a pipeline dedicated to genotype segregating Mobile Element Insertion (MEI) previously scored with a MEI detection tool such as MELT (Mobile Element Locator Tool, Gardner et al., 2017). Please adress all you questions and comments using the "issue" tab of the repository