SNT

A Unifying Toolbox for Quantification of Neuronal Anatomy. This repository hosts the scripts that were used to assemble the figures of the SNT publication. The ImageJ framework for quantification of neuronal anatomy. These scripts are intended to run from a Fiji installation subscribed to the Neuroanatomy update site, as detailed in the SNT documentation. Scripts relying on sciview/Cx3D functionality, also require the optional subscription to the SciView-Unstable update site. Since data is frequently downloaded from external servers, an internet connection is required. SNT is ImageJ's framework for semi-automated tracing, visualization, quantitative analyses and modeling of neuronal morphology.