SLOPPR

Flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data. SLIDR and SLOPPR: A suite of two pipelines for flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data. SLIDR and SLOPPR identify spliced leaders (SLs) from 5'-tails of RNA-Seq reads that are soft-clipped after read alignment to a reference genome or transcriptome.