SeeCiTe

a method to assess CNV calls from SNP arrays using trio data. SeeCiTe is a novel CNV quality control tool that post-processes output from current CNV calling tools exploiting child-parent trio data to classify calls in quality categories and provide a set of visualizations for each putative CNV call in the offspring. It utilizes probe-level CNV data in trios (and singletons) to systematically highlight potential artefacts and visualize signal intensities in a streamlined fashion suitable for biobank scale studies.