scPAFA

github.com/zhuolihuang/scpafa
Molecular interactions, pathways and networks
Tool
Python

scPAFA is a Python library designed for large-scale single-cell RNA sequencing datasets, enabling rapid pathway activity score (PAS) computation and identifying disease-related multicellular pathway modules. It demonstrated >33-fold speedup in PAS computation and identification of relevant pathway modules in colorectal cancer and lupus datasets.

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