Scirpy

A Scanpy extension for analyzing single-cell T-cell receptor sequencing data. Scirpy: A Scanpy extension for analyzing single-cell immune-cell receptor sequencing data. Scirpy is a scalable python-toolkit to analyse T cell receptor (TCR) or B cell receptor (BCR) repertoires from single-cell RNA sequencing (scRNA-seq) data. It seamlessly integrates with the popular scanpy library and provides various modules for data import, analysis and visualization. Tutorials — scirpy documentation.