scclusteval

Evaluating single-cell cluster stability using the Jaccard similarity index. Snakemake workflow for subsampling and repeat clustering. A snakemake pipeline to scatter and gather Seurat@ident by subsampling the cells and repeat for multiple times. This is useful for evaluating the cluster stability using different parameters. The goal of scclusteval(Single Cell Cluster Evaluation) is to evaluate the single cell clustering stability by subsampling the cells and provide many visualization methods for comparing clusters.