pyrpipe

a python package for RNA-Seq workflows. pyrpipe: python rna-seq pipeliner. Example to identify orphan transcripts in maize by pyrpipe. A python package for RNA-Seq workflows — pyrpipe 0.0.1 documentation. pyrpipe (Pronounced as "pyre-pipe") is a python package to easily develop bioinformatic or any other computational pipelines in pure python. pyrpipe provides an easy-to-use framework for importing any UNIX command in python. pyrpipe comes with specialized classes and functions to easily code RNA-Seq processing workflows. pyrpipe (Pronounced as "pyre-pipe") is a python package to easily develop RNA-Seq analyses workflow by integrating popular RNA-Seq analysis programs in an object oriented manner. pyrpipe can be used on local computers or on HPC environments to manage analysis of RNA-Seq data.