pico_galaxy

github.com/peterjc/pico_galaxy
Stale17updated 2 years ago
Shell
Other

Short Python script (using Biopython library functions) to extract sequences from a FASTA, QUAL, FASTQ, or SFF file based on the list of IDs given by a column of a tabular file. The output order follows that of the tabular file, and if there are duplicates in the tabular file, there will be duplicates in the output sequence file.

Sourced from

  • GitHubgithub.com/peterjc/pico_galaxy
  • bio.toolspico_galaxy

Related resources

Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science with 140+ ready-to-use skills and 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Antigravity, and the open Agent Skills standard (K-Dense-AI, 26K+ stars, 2025)

Active30.6K3 days ago
Python
MIT

Comprehensive collection of 125+ ready-to-use scientific skill modules for Claude AI across bioinformatics, cheminformatics, clinical research, ML, and materials science

Active27.8K1 month ago
Python
MIT

Diffusion-based molecular docking achieving SOTA blind docking performance, treating ligand pose prediction as generative diffusion over SE(3), with DiffDock-L update for improved generalization (MIT CSAIL, ICLR 2023)

Idle1.5K1 year ago
Python
MIT

Curated library of 550+ medical research agent skills spanning evidence insights, protocol design, omics/clinical data analysis, and academic writing; each skill is reviewed through MedSkillAudit and compatible with Claude Code, Codex, Open Code, OpenClaw, and SKILL.md-compatible agents (AIPOCH, 1.2K+ stars, MIT License, 2026)

Active1.3K2 weeks ago
Python
MIT

Provides functionality for producing geometric representations of protein and RNA structures, and biological interaction networks.

Active1.2K1 week ago
Jupyter Notebook
MIT

An object-oriented, webGL based JavaScript library for online molecular visualization.

Active9911 month ago
Jupyter Notebook
NOASSERTION