PhyKIT
github.com/jlsteenwyk/phykita UNIX shell toolkit for processing and analyzing phylogenomic data. Docs · Report Bug · Request Feature. PhyKIT is a UNIX shell toolkit for processing and analyzing phylogenomic data. Quick Start — phykit documentation. PhyKIT, a toolkit for the UNIX shell environment with 30 functions that process multiple sequence alignments and phylogenies for broad applications. If you found PhyKIT useful, please cite PhyKIT: a UNIX shell toolkit for processing and analyzing phylogenomic data. bioRxiv. doi: 10.1101/2020.10.27.358143. This documentation covers downloading and installing PhyKIT. Details about each function as well as tutorials for using PhyKIT are available in the online documentation.