OCTAD

An open workplace for virtually screening therapeutics targeting precise cancer patient groups using gene expression features. All files can be found on the Chen Lab RNA-Seq server: /home/ubuntu/chenlab_v2/proj/PatrickN/desktop_pipeline_v0.1/. OCTAD:Open Cancer Therapeutic Discovery. Bin Chen, PhD. MSU. contact: Bin.Chen@hc.msu.edu. This version includes some new data files, so be sure to download those from the above directory. The pipeline is configured to run within the folder structure as found in the above directory. William Zeng. MD Candidate. UCSF. contact: billy.zeng@ucsf.edu. Please contact Patrick: patrick.newbury@hc.msu.edu with any issues. https://s3-us-west-2.amazonaws.com/chenlab-data-public/octad In the parent folder for this pipeline, create a folder named "data". Place all files from this download into this data folder. Consolidated many data files into new files: CCLE_OCTAD.RData, metadata.RData