NetCoMi

Network Construction and Comparison for Microbiome Data in R. NetCoMi (Network Comparison for Microbiome data) provides functions for constructing, analyzing, and comparing networks suitable for the application on microbial compositional data. The package includes existing methods for zero handling, normalization, estimating associations between OTU/taxa as well as dissimilarities between samples. Furthermore, a function for constructing differential association networks including methods for identifying differentially associated taxa is offered.