MUMmer

A system for rapidly aligning entire genomes, whether in complete or draft form.

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SIMD C library for global, semi-global, and local pairwise sequence alignments

Idle2849 months ago

BWA-MEM drop-in replacement: 2-3x faster, 2-5x cheaper, 100% identical output on standard CPUs.

Active223 months ago

An ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences.

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences.

the wavefront alignment algorithm (WFA) which expoit sequence similarity to speed up alignment

An ultrafast protein aligner for `blastp` and `blastx` like searches.