MUMmer
github.com/mummer4/mummerA system for rapidly aligning entire genomes, whether in complete or draft form.
Sourced from
- Awesome Bioinformatics — github.com/mummer4/mummer
- GitHub — github.com/mummer4/mummer
Related resources
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences.
An ultrafast protein aligner for `blastp` and `blastx` like searches.
An ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences.
SIMD C library for global, semi-global, and local pairwise sequence alignments
the wavefront alignment algorithm (WFA) which expoit sequence similarity to speed up alignment
BWA-MEM drop-in replacement: 2-3x faster, 2-5x cheaper, 100% identical output on standard CPUs.