Metage2Metabo

metabolic complementarity applied to genomes of large-scale microbiotas for the identification of keystone species. From annotated genomes to metabolic screening in large scale microbiotas. Metage2metabo is a Python3 (Python >= 3.6) tool to perform graph-based metabolic analysis starting from annotated genomes (reference genomes or metagenome-assembled genomes). It uses Pathway Tools in a automatic and parallel way to reconstruct metabolic networks for a large number of genomes. The obtained metabolic networks are then analyzed individually and collectively in order to get the added value of metabolic cooperation in microbiota over individual metabolism and to identify and screen interesting organisms among all. m2m — metage2metabo documentation. Free document hosting provided by Read the Docs