LSTrAP-Cloud

A User-friendly Cloud Computing Pipeline to Infer Co-functional and Regulatory Networks. Large-Scale Transcriptome Analysis Pipeline on Cloud. If you use LSTrAP-Cloud in your research, please cite:. This repository is built upon wirriamm/CoNeGC. LSTrAP-Cloud is a pipeline designed for building co-expression networks from RNA-seq data (fastq files from ENA) on Goolge Colaboratory (Colab). Leveraging on the user-friendliness of the Colab interface, LSTrAP-Cloud allows users to analyse large scale transcriptome data without having to access the linux terminal, making it accessible to both bioinformaticians and biologist. To get started, we have provided a tutorial based on example data found here. While the pipeline was designed for plants, we have also made the script compatible with non-plant organisms.