ImmClassifier

Knowledge-based classification of fine-grained immune cell types in single-cell RNA-Seq data with ImmClassifier. Knowledge-based and lineage-driven immune cell classification in single-cell RNA-Seq data. ImmClassifier (Immune cell classifier), a knowledge-based and lineage-driven immune cell classification algorithm with fine annotation granularity yet high prediction accuracy. ImmClassifer seamlessly integrates the biology of immune cell differentiation, the strength of heterogeneous reference datasets and the state-of-art machine learning models. ImmClassifier cascades a machine learning module and a deep learning module. Maintainer: Xuan Liu xuan.liu.1@uth.tmc.edu Sara Gosline sara.gosline@sagebase.org.