Haplo-ST

Whole-Genome Sequence Typing shows extensive diversity of Listeria monocytogenes in the outdoor environment and poultry processing plants. Haploid Sequence-Typer (Haplo-ST). Haplo-ST is a pipeline for performing standardized whole-genome multi-locus sequence typing (wgMLST) of Listeria monocytogenes (Lm) isolates from whole-genome sequencing (WGS) data. Along with wgMLST profiles, this pipeline also generates assembled allele sequences and identifies paralogous genes for each Lm isolate.