GeneDMRs
github.com/xiaowangcn/genedmrsan R package for Gene-based Differentially Methylated Regions analysis. Gene-based differentially methylated regions analysis. GeneDMRs is an R package to detect the differentially methylated regions based on genes (DMG), gene body (DMP, DME, DMI), CpG islands and gene body interacted with CpG island features (e.g., DMG/DMP/DME/DMI_CpG island and DMG/DMP/DME/DMI_CpG island shore).