Gaolaboratory/iona-denoise-100m

iona-denoise-200m scores every peak of a tandem mass spectrum (MS/MS) as signal or noise. It is the Iona 200m encoder with a per-peak classification head, fine-tuned for noise-peak detection.

iona-denoise-400m scores every peak of a tandem mass spectrum (MS/MS) as signal or noise. It is the Iona 400m encoder with a per-peak classification head, fine-tuned for noise-peak detection.

iona-denoise-50m scores every peak of a tandem mass spectrum (MS/MS) as signal or noise. It is the Iona 50m encoder with a per-peak classification head, fine-tuned for noise-peak detection.

Iona is a transformer encoder foundation model for tandem mass spectra (MS/MS). It treats each centroided peak as a token and learns how peaks relate to each other through a per-head attention bias over the signed m/z difference (Δm/z) between every pair of peaks.

Iona is a transformer encoder foundation model for tandem mass spectra (MS/MS). It treats each centroided peak as a token and learns how peaks relate to each other through a per-head attention bias over the signed m/z difference (Δm/z) between every pair of peaks.

Iona is a transformer encoder foundation model for tandem mass spectra (MS/MS). It treats each centroided peak as a token and learns how peaks relate to each other through a per-head attention bias over the signed m/z difference (Δm/z) between every pair of peaks.