FM-index

github.com/traviswheelerlab/avxwindowfmindex
Small molecules
Tool
C
BSD-3-Clause

An optimized FM-index library for nucleotide and amino acid search. A fast, AVX2 accelerated FM-index library that utilizes windows of SIMD registers to quickly locate exact match kmers in genetic data. This FM-index is highly optimized for both nucleotide and amino sequences, but is unsuitable for general text.

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