EvoBind

RFdiffusion is an open source method for structure generation, with or without conditional information (a motif, target etc).

AlphaFold/ESMFold accessible implementation with AF3 JSON export, database updates

RFantibody is a pipeline for structure-based de novo antibody and nanobody design, integrating backbone design with RFdiffusion, sequence design with ProteinMPNN, and structure prediction with RoseTTAFold2. It provides a comprehensive toolset for generating and filtering high-quality antibody designs.

SQUARNA is a tool for RNA secondary structure prediction. It can take a single RNA sequence or an alignment of sequences as input. SQUARNA handles pseudoknots and can predict alternative structures. SQUARNA allows structural restraints and chemical probing data as additional input and is available at https://github.com/febos/SQUARNA and https://larnal.imol.institute/.

This tutorial aims to illustrate the process of protein-ligand docking, step by step, using the BioExcel Building Blocks library (biobb).

This tutorial aims to illustrate the process of generating protein conformational ensembles from 3D structures using Coarse-Grained tools from the FlexServ server and analysing its molecular flexibility