D-GENIES

github.com/genotoul-bioinfo/dgenies
Active116updated 4 months ago
Shell
GPL-3.0

D-GENIES – for Dot plot large Genomes in an Interactive, Efficient and Simple way – is an online tool designed to compare two genomes. It supports large genome and you can interact with the dot plot to improve the visualization.

Sourced from

  • GitHub — github.com/genotoul-bioinfo/dgenies
  • bio.tools — d-genies

Related resources

Deep learning-based variant caller

Idle3.8K6 months ago
Python
BSD-3-Clause

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

Active6802 months ago
Python
GPL-3.0

Pairwise SNP distance matrix from a FASTA sequence alignment

Idle1569 months ago
C
GPL-3.0

EcoliTyper is a revolutionary bioinformatics pipeline that eliminates workflow fragmentation in E. coli genomic surveillance. By integrating nine core analyses into a single automated workflow, EcoliTyper transforms disconnected genomic data into coherent biological narratives with actionable public health intelligence. It is a species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli, perfect for clinical microbiology, outbreak investigations, and genomic research.

Active292 months ago
Python
MIT

AcinetoScope is an automated, comprehensive bioinformatics pipeline designed specifically for the genomic analysis of Acinetobacter baumannii, a WHO Critical Priority pathogen responsible for devastating hospital-acquired infections. It integrates seven analysis types (MLST, ABRicate, AMRFinder, Kaptive 3, APT, PlasmidFinder, and mutation detection) into a single automated workflow — from FASTA to actionable insights. The pipeline offers both gene-centric and sample-centric reporting, dynamic grouping by typing, and is optimised for HPC, cloud, and container environments.

Active203 weeks ago
Python
MIT

UNIX-style FASTA manipulation tools.

Stale192 years ago
Python
MIT