Astir
github.com/camlab-bioml/astirastir is a tool for automated cell identification from single-cell multiplexed imaging and proteomics. astir is a modelling framework for the assignment of cell type across a range of single-cell technologies such as Imaging Mass Cytometry (IMC). astir is built using pytorch and uses recognition networks for fast minibatch stochastic variational inference.
Sourced from
- GitHub — github.com/camlab-bioml/astir
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