Find open-source science resources
A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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881 of 7,064 resources
Showing 201–250
micymike/vilyalabs-med
by micymikeThis model is a fine-tuned version of LiquidAI/LFM2.5-230M optimized for medical chat and consultation.
microsoft/skala-1.1
by microsoftIn pursuit of the universal functional for density functional theory (DFT), the OneDFT team from Microsoft Research AI for Science has developed the Skala-1.1 exchange-correlation functional, as introduced in Accurate and scalable exchange-correlation with deep learning, Luise et al. 2025.
genzeonplatform/cliniguard-laboratory-ner
by genzeonplatformCliniGuard Laboratory NER is a transformer-based clinical Named Entity Recognition model developed by Genzeon Platforms for automated extraction of laboratory test results, values, units, reference ranges, and abnormality flags from unstructured clinical text.
genzeonplatform/cliniguard-diagnosis-icd-ner
by genzeonplatformCliniGuard Diagnosis ICD NER is a transformer-based clinical Named Entity Recognition model developed by Genzeon Platforms for automated extraction of diagnoses, conditions, and support for ICD-10/SNOMED code mapping from unstructured clinical text.
genzeonplatform/cliniguard-medication-ner
by genzeonplatformCliniGuard Medication NER is a transformer-based clinical Named Entity Recognition model developed by Genzeon Platforms for automated extraction of medication names, dosages, routes, frequencies, and administration details from unstructured clinical text.
CliniGuard Clinical Findings NER is a transformer-based clinical Named Entity Recognition model developed by Genzeon Platforms for automated extraction of clinical findings, diseases, conditions, anatomical locations, and clinical modifiers from unstructured clinical text.
introvoyz041/DrugGen-2
by introvoyz041# DrugGen 2: A disease-aware language model for enhancing drug discovery DrugGen-2 is a disease‑aware language model specialized for generating drug-like SMILES structures based on both disease pathways and protein sequence.
Strict automatic scores on the unchanged 1,309-example primary holdout; compare values within each task panel.
onnx-community/OpenMed-NER-PharmaDetect-SuperClinical-434M-ONNX
by onnx-communityThis is an ONNX version of OpenMed/OpenMed-NER-PharmaDetect-SuperClinical-434M. It was automatically converted and uploaded using this Hugging Face Space.
RetroAgent is a 4B-parameter LLM agent for multi-step retrosynthesis planning. It decomposes a target molecule into commercially available building blocks by searching over an AND-OR graph of molecules and reactions, driven entirely by tool calls.
trillionlabs/TxGravity-30B-A5B
by trillionlabsTxGravity-30B-A5B is a therapeutics-focused language model fine-tuned from the Gravity-30B-A5B-base. It is trained to predict a broad range of therapeutic properties — small-molecule ADMET, toxicity, drug–target interaction, protein–protein and peptide–MHC interaction, and more — following the…
mims-harvard/CASCADE-Alzheimer
by mims-harvardCASCADE: context-aware single-cell modelling links cellular programmes to patient-level disease phenotypes
Phsntom/ESMFold2-Fast
by PhsntomESMFold2 is a state-of-the-art model for protein structure prediction and design that defines a new frontier for speed and accuracy. The model predicts high-resolution, all-atom 3D protein structures directly from amino acid sequences, with optional multiple sequence alignment (MSA) input for…
mlinslab/neurovfm-llm
by mlinslabHarshBhanushali7705/medgemma-27b-text-it-GPTQ-4bit
by HarshBhanushali7705This repository contains a 4-bit GPTQ quantized version of google/medgemma-27b-text-it, optimized for high-throughput inference using vLLM and the Marlin kernel.
alimotahharynia/DrugGen-2
by alimotahharynia# DrugGen 2: A disease-aware language model for enhancing drug discovery DrugGen-2 is a disease‑aware language model specialized for generating drug-like SMILES structures based on both disease pathways and protein sequence.
CladeTeam/CENO-P-1B
by CladeTeamCENO-P-1B is the multi-species alignment (MSA) post-trained variant of the 1B CENO DNA foundation model, for variant effect prediction (VEP). It carries intraencodingpattern in its config and ships the MSA scoring path (modelingcenop.py), which consumes a per-token seq_idx to score packed MSA…
CladeTeam/CENO-1B-131k
by CladeTeamCENO-1B-131k is the long-context (131k) checkpoint of the 1B CENO DNA foundation model — a causal language model over genomic sequence built on a Nemotron-H Mamba / Attention / Mixture-of-Experts hybrid backbone (no MSA inputs).
CladeTeam/CENO-80M-1m
by CladeTeamCENO-80M-1m is the long-context (1M) checkpoint of the 80M CENO DNA foundation model — a causal language model over genomic sequence built on a Nemotron-H Mamba / Attention / Mixture-of-Experts hybrid backbone (no MSA inputs).
ekwan16/MagNET
by ekwan16MagNET is a family of neural networks for predicting NMR chemical shifts. This repository contains all models, datasets, and code to reproduce the data in the MagNET paper.
reaperdoesntknow/Qwen3-1.7B-Distilled-30B-A3B
by reaperdoesntknowA 1.7B-parameter causal language model distilled from Qwen3-30B-A3B on 6,122 STEM chain-of-thought samples using discrepancy-informed knowledge distillation. The training objective emphasizes proof structure, detects reasoning pivot tokens through token-level divergence dynamics, smooths…
Fine-tuned ESM-2 650M with LoRA for predicting protein subcellular localization (10 classes).
phenobase/phenovisionL
by phenobasePhenoVisionL is a Vision Transformer (ViT-Large) model fine-tuned to detect leaf phenological states in plant photographs: green leaves, colored (senescent) leaves, and breaking leaf buds. It was trained on 165,988 iNaturalist records of deciduous woody plants using a two-stage semi-supervised…
phenobase/phenovision
by phenobasePhenoVision is a Vision Transformer (ViT-Large) model fine-tuned to detect flowers and fruits in plant photographs. It was trained on 1.5 million human-annotated iNaturalist images and has been used to generate over 30 million new phenology records across 119,000+ plant species, vastly expanding…
King3Djbl/nexus-medical-GGUF
by King3Djbl> NEXUS domain specialist for medical Q&A and clinical reasoning — lightweight & uncensored.
songlab/cadd-distillation
by songlabfableforge-ai/NEXUS-Medical
by fableforge-ai> NEXUS domain specialist for medical Q&A and clinical reasoning — lightweight & uncensored.
Clinical-Reasoning-Hub/pentabrid-27b
by Clinical-Reasoning-Hublowdown-labs/fela-genomics
by lowdown-labslowdown-labs/fela-chemistry
by lowdown-labsgenesisml/decaf
by genesismlDistilling Boltz: Flow Maps for Fast All-Atom Cofolding
!Screenshot 2026-07-05 at 2.33.47 AM
Prior-Labs/tabpfn_3
by Prior-Labs### Model Overview TabPFN-3 is a transformer-based foundation model that uses in-context-learning to solve tabular prediction problems in a forward pass. Inference code can be found at https://github.com/PriorLabs/TabPFN. More details can be found in the Model Report.
This repository contains LoRA finetunes of DiffusionGemma (image-conditioned discrete-diffusion LLM) for radiology visual question answering, each paired with an autoregressive Gemma-4 finetune as a controlled baseline. It corresponds to the paper Discrete Diffusion Language Models for Interactive…
zxcghoul3228/gselformer-mv-dynsurf
by zxcghoul3228Fine-tuned gSelformer-MV-Dyn model for predicting dynamic surface tension (DST) curves from SMILES, temperature, and concentration.
A native MLX port of OpenMed/privacy-filter-multilingual-v2 for Apple Silicon PII detection and de-identification with OpenMed. This is the unquantized BF16 reference artifact. For the 8-bit sibling, see OpenMed/privacy-filter-multilingual-v2-mlx-8bit.
A native MLX port of OpenMed/privacy-filter-multilingual-v2, affine-quantized to 8-bit for faster and smaller Apple Silicon PII detection with OpenMed. For the unquantized BF16 reference, see OpenMed/privacy-filter-multilingual-v2-mlx.
DaisyChainAI/daisychain-genomics
by DaisyChainAI🤗 Blog | 📄 Paper | 💻 Code | 🌐 FineMed | 🩺 DoctoBERT
doctolib-lab/doctobert-fr-base
by doctolib-lab🤗 Blog | 📄 Paper | 💻 Code | 🌐 FineMed | 🩺 DoctoBERT